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Marco Molari

Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection
2022 · Andrea Di Gioacchino, Jonah Procyk, et al. · PLoS Computational Biology · 45
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PanGraph: scalable bacterial pan-genome graph construction
2023 · Nicholas Noll, Marco Molari, et al. · Microbial Genomics · 37
Quantitative modeling of the effect of antigen dosage on B-cell affinity distributions in maturating germinal centers
2020 · Marco Molari, Klaus Eyer, et al. · eLife · 32
Transposable elements are driving rapid adaptation of Enterococcus faecium
2026 · Matthew P. Grieshop, Aaron A. Behr, et al. · Nature · 15
Aggregation models on hypergraphs
2016 · Diego Alberici, Pierluigi Contucci, et al. · Annals of Physics · 10
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Quantifying the Evolutionary Dynamics of Structure and Content in Closely Related E. coli Genomes
2025 · Marco Molari, Liam P Shaw, et al. · Molecular Biology and Evolution · 8
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The intestinal environment potentiates bacteriophage adaptation in response to phenotypic resistance in Salmonella Typhimurium
2025 · Nicolas Wenner, Anouk Bertola, et al. · Proceedings of the National Academy of Sciences · 7
Survival probability and size of lineages in antibody affinity maturation
2021 · Marco Molari, Rémi Monasson, et al. · Physical review. E · 3
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Automated Bacteriophage Evolution Studies with the Aionostat
2025 · Valentin Druelle, Marco Molari, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2
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Author response: Quantitative modeling of the effect of antigen dosage on B-cell affinity distributions in maturating germinal centers
2020 · Marco Molari, Klaus Eyer, et al. · eLife · 1
jfendley/phage-pangenomes: Initial Zenodo release
2026 · Jemma M. Fendley, Marco Molari · Zenodo (CERN European Organization for Nuclear Research)
m-huot/AFFINITY_MAT: PRX Life
2026 · Huot, Marian, Molari, Marco, et al. · Zenodo (CERN European Organization for Nuclear Research)
Optimal Maturation Protocols for High-Affinity Antibody Targets: A Path-Integral Approach
2026 · Marian Huot, Marco Molari, et al. · PRX Life
Competition against the intestinal microbiota selects for pathoadaptive traits in ESBL E. coli
2026 · Pramod K Jangir, Leonardo F. Lemos Rocha, et al. · bioRxiv (Cold Spring Harbor Laboratory)
Synteny and linkage decay in bacteriophage pangenomes
2025 · Jemma M. Fendley, Marco Molari, et al. · bioRxiv (Cold Spring Harbor Laboratory)
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Data for "Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection"
2022 · Di Gioacchino, Andrea, Procyk, Jonah, et al. · Zenodo (CERN European Organization for Nuclear Research)
Modélisation et inférence Bayésienne pour la maturation d'affinité des anticorps
2020 · Marco Molari · theses.fr (ABES)
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Works count: 24
Citation count: 160
H-index: 7
I10-index: 5
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