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Jason S. Cumbie

Observed names: Cumbie, Jason, J. S. Cumbie, Jason S Cumbie, Jason S. Cumbie
OpenAlex ID: A5057934945
High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes
2007 · Noah Fahlgren, Miya D. Howell, et al. · PLoS ONE · 1,200
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Genome-Wide Profiling and Analysis of Arabidopsis siRNAs
2007 · Kristin D Kasschau, Noah Fahlgren, et al. · PLoS Biology · 533
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Genome-Wide Analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 Pathway inArabidopsisReveals Dependency on miRNA- and tasiRNA-Directed Targeting
2007 · Miya D. Howell, Noah Fahlgren, et al. · The Plant Cell · 396
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The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq
2011 · Yanming Di, Daniel W Schafer, et al. · Statistical Applications in Genetics and Molecular Biology · 191
The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster
2013 · Kathryn E. Bushley, Rajani Raja, et al. · PLoS Genetics · 172
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Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis
2015 · Sergei A. Filichkin, Jason S. Cumbie, et al. · Molecular Plant · 141
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Computational and analytical framework for small RNA profiling by high-throughput sequencing
2009 · Noah Fahlgren, Christopher M. Sullivan, et al. · RNA · 122
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Distinct Expression Patterns of Natural Antisense Transcripts in Arabidopsis
2007 · Stefan R. Henz, Jason S. Cumbie, et al. · PLANT PHYSIOLOGY · 99
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Update of ASRP: the Arabidopsis Small RNA Project database
2007 · T. W. H. Backman, C. M. Sullivan, et al. · Nucleic Acids Research · 82
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GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences
2011 · Jason S. Cumbie, Jeffrey A. Kimbrel, et al. · PLoS ONE · 70
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Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis
2014 · S. A. Filichkin, J. S. Cumbie, et al. · Molecular Plant · 61
NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites
2015 · Jason S. Cumbie, Maria G. Ivanchenko, et al. · BMC Genomics · 46
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Length Bias Correction in Gene Ontology Enrichment Analysis Using Logistic Regression
2012 · Gu Mi, Yanming Di, et al. · PLoS ONE · 39
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Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants
2016 · Molly Megraw, Jason S. Cumbie, et al. · The Plant Cell · 34
Variable Suites of Non-effector Genes Are Co-regulated in the Type III Secretion Virulence Regulon across the Pseudomonas syringae Phylogeny
2014 · Tatiana S. Mucyn, Scott Yourstone, et al. · PLoS Pathogens · 28
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Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana
2015 · Jason S. Cumbie, Sergei A. Filichkin, et al. · Plant Methods · 27
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Alternative Splicing in the Obligate Biotrophic Oomycete Pathogen Pseudoperonospora cubensis
2014 · Alyssa Burkhardt, Alex Buchanan, et al. · Molecular Plant-Microbe Interactions · 21
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RNA-Seq for Plant Pathogenic Bacteria
2011 · Jeffrey A. Kimbrel, Yanming Di, et al. · Genes · 16
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CHAPTER 25: AutoSPOTs: Automated image analysis for eumerating callose deposition
2017 · Jason S. Cumbie, Rebecca C. Pankow, et al. · The American Phytopathological Society eBooks
CumbieJasonBotanyPlantPathologyVariableSuitesNon-Effector.pdf
2017 · Tatiana S. Mucyn, Scott Yourstone, et al.
Additional file 5: Table S3. of NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites
2015 · Cumbie, Jason, Ivanchenko, Maria, et al. · Figshare
Additional file 4: Table S2. of NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites
2015 · Cumbie, Jason, Ivanchenko, Maria, et al. · Figshare
Additional file 3: Table S1. of NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites
2015 · Cumbie, Jason, Ivanchenko, Maria, et al. · Figshare
Additional file 8: of Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana
2015 · Cumbie, Jason, Filichkin, Sergei, et al. · Figshare
Additional file 2: Figure S1. of NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites
2015 · Cumbie, Jason, Ivanchenko, Maria, et al. · Figshare
Works count: 45
Citation count: 3,278
H-index: 17
I10-index: 18
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