Author

Cyril Malbranke

Observed name: Malbranke, Cyril

Institutions: SIB Swiss Institute of Bioinformatics, École Polytechnique Fédérale de Lausanne

Observed institutions: SIB Swiss Institute of Bioinformatics, Centre National de la Recherche Scientifique, Institut Pasteur, Université Paris Cité, Université Paris Sciences et Lettres, École Normale Supérieure - PSL, Sorbonne Université, Laboratoire de Physique de l'Ecole Normale Supérieure, Microbiologie Intégrative et Moléculaire, École Polytechnique Fédérale de Lausanne

ORCID: 0000-0002-4545-0801

Observed ORCID: 0000-0002-4545-0801

OpenAlex ID: A5069727508

Machine learning for evolutionary-based and physics-inspired protein design: Current and future synergies

2023 · Cyril Malbranke, David Bikard, et al. · Current Opinion in Structural Biology · 39

ProtMamba: a homology-aware but alignment-free protein state space model

2025 · Damiano Sgarbossa, Cyril Malbranke, et al. · Bioinformatics · 29

Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment

2023 · Cyril Malbranke, William Rostain, et al. · PLoS Computational Biology · 16

Rubisco is slow across the tree of life

2025 · Benoit de Pins, Cyril Malbranke, et al. · Proceedings of the National Academy of Sciences · 12

Improving sequence-based modeling of protein families using secondary-structure quality assessment

2021 · Cyril Malbranke, David Bikard, et al. · Bioinformatics · 8

ProteomeLM: A proteome-scale language model enables accurate and rapid prediction of protein–protein interactions and gene essentiality across taxa

2026 · Cyril Malbranke, Gionata Paolo Zalaffi, et al. · Proceedings of the National Academy of Sciences · 3

Out-of-Equilibrium Selection Pressure Enhances Inference from Protein Sequence Data

2026 · Nicola Dietler, Cyril Malbranke, et al. · Physical Review Letters · 1

Improving sequence-based modeling of protein families using secondary structure quality assessment

2021 · Malbranke, Cyril, Bikard, David, et al. · HAL · 1

Predicting host-pathogen interactions using a proteome-scale language model

2026 · Cyril Malbranke, Cecilia Fruet, et al. · bioRxiv (Cold Spring Harbor Laboratory)

Works count: 10

Citation count: 109

H-index: 5

I10-index: 4