Get started
Author

Thomas Defard

PaDiM: A Patch Distribution Modeling Framework for Anomaly Detection and Localization
2021 · Thomas Defard, Aleksandr Setkov, et al. · Lecture notes in computer science · 1,396
PDF
An interactive murine single-cell atlas of the lung responses to radiation injury
2023 · Sandra Curras-Alonso, Juliette Soulier, et al. · Nature Communications · 83
PDF
A point cloud segmentation framework for image-based spatial transcriptomics
2024 · Thomas Defard, Hugo Laporte, et al. · Communications Biology · 20
RNA2seg: a generalist model for cell segmentation in image-based spatial transcriptomics
2026 · Thomas Defard, Alice Blondel, et al. · Genome biology · 3
autoFISH - a modular toolbox for sequential smFISH experiments
2024 · Christian Weber, Thomas Defard, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 3
autoFISH: a modular toolbox for sequential single-molecule RNA FISH experiments
2026 · Christian Weber, Thomas Defard, et al. · Communications Biology · 1
Homebuilt Imaging-Based Spatial Transcriptomics: Tertiary Lymphoid Structures as a Case Example
2024 · Thomas Defard, Auxence Desrentes, et al. · Methods in molecular biology · 1
A DIY guide for image-based spatial transcriptomic: TLS as a case example
2024 · Thomas Defard, Auxence Desrentes, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
PDF
Shieldstral
2026 · Calvi, Antonia, Sooriyarachchi, Avinash, et al. · arXiv (Cornell University)
PDF
Robostral Navigate
2026 · Bounhar, Abdelaziz, Somani, Abhijeet, et al. · arXiv (Cornell University)
PDF
An optimized workflow for spatial transcriptomics across early development in Xenopus
2026 · Chenxi Zhou, Shubhamay Das, et al. · bioRxiv (Cold Spring Harbor Laboratory)
RNA2seg: a generalist model for cell segmentation in image-based spatial transcriptomics
2026 · Defard, Thomas, Blondel, Alice, et al. · Figshare
Additional file 1 of RNA2seg: a generalist model for cell segmentation in image-based spatial transcriptomics
2026 · Defard, Thomas, Blondel, Alice, et al. · Figshare
python code : RNA2seg - A generalist model for cell segmentation in image-based spatial transcriptomics
2025 · Blondel, Alice, Defard, Thomas · Zenodo (CERN European Organization for Nuclear Research)
RNA2seg
2025 · Alice Blondel, Thomas Defard, et al. · Hugging Face
Development of computational methods for image-based spatial transcriptomics
2025 · Thomas Defard
Simulation of smFISH experiments on mouse lung tissue with simTissue
2023 · Defard, Thomas · Zenodo (CERN European Organization for Nuclear Research)
demo data curras-alonso_murine_single_cell_atlas
2023 · Defard, Thomas · Zenodo (CERN European Organization for Nuclear Research)
Works count: 27
Citation count: 1,505
H-index: 3
I10-index: 3
Year
Topic
Type