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Author

Shiji Zhao

Observed name: Zhao, Shiji
Institution: SandboxAQ
ORCID: 0000-0002-4514-0897
Observed ORCID: 0000-0002-4514-0897
OpenAlex ID: A5082500178
AmberTools
2023 · David A. Case, Hasan Metin Aktulga, et al. · Journal of Chemical Information and Modeling · 2,362
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Amber 2021: Reference Manual
2021 · David A. Case, Hasan Metin Aktulga, et al. · Open Repository and Bibliography (University of Luxembourg) · 165
Elucidation of WW domain ligand binding specificities in the Hippo pathway reveals STXBP4 as YAP inhibitor
2019 · Rebecca E Vargas, Vy Thuy Duong, et al. · The EMBO Journal · 35
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PyRESP : A Program for Electrostatic Parameterizations of Additive and Induced Dipole Polarizable Force Fields
2022 · Shiji Zhao, Haixin Wei, et al. · Journal of Chemical Theory and Computation · 31
Molecular Basis for Polyketide Ketoreductase–Substrate Interactions
2020 · Shiji Zhao, Fanglue Ni, et al. · International Journal of Molecular Sciences · 28
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Matrix-Augmented Pooling Strategy for High-Throughput Target Deconvolution Reveals Cell Type Specific Off-Targets and Responses
2022 · Hongchao Ji, Xue Lu, et al. · Cell chemical biology · 22
Development of a Pantetheine Force Field Library for Molecular Modeling
2021 · Shiji Zhao, Andrew J. Schaub, et al. · Journal of Chemical Information and Modeling · 22
Accurate Reproduction of Quantum Mechanical Many-Body Interactions in Peptide Main-Chain Hydrogen-Bonding Oligomers by the Polarizable Gaussian Multipole Model
2022 · Shiji Zhao, Haixin Wei, et al. · Journal of Chemical Theory and Computation · 20
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Transferability of the Electrostatic Parameters of the Polarizable Gaussian Multipole Model
2023 · Shiji Zhao, Piotr Cieplak, et al. · Journal of Chemical Theory and Computation · 18
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Optimal Scheme to Achieve Energy Conservation in Induced Dipole Models
2023 · Zhen Huang, Shiji Zhao, et al. · Journal of Chemical Theory and Computation · 14
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Assessment of Amino Acid Electrostatic Parametrizations of the Polarizable Gaussian Multipole Model
2024 · Shiji Zhao, Piotr Cieplak, et al. · Journal of Chemical Theory and Computation · 12
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Streamlining and Optimizing Strategies of Electrostatic Parameterization
2023 · Qiang Zhu, Yongxian Wu, et al. · Journal of Chemical Theory and Computation · 12
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Computational structural enzymology methodologies for the study and engineering of fatty acid synthases, polyketide synthases and nonribosomal peptide synthetases
2019 · Andrew J. Schaub, Gabriel O. Moreno, et al. · Methods in enzymology on CD-ROM/Methods in enzymology · 12
Improved expression of recombinant fusion defensin geneplasmids packed with chitosan-derived nanoparticlesand effect on antibacteria and mouse immunity
2018 · Xiaoping Wan, Jianlin Chen, et al. · Experimental and Therapeutic Medicine · 5
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Co-expression of mFat-1 and pig IGF-1 genes by recombinant plasmids in modified chitosan nanoparticles and its synergistic effect on mouse immunity
2017 · Qi Xiong, Jianlin Chen, et al. · Scientific Reports · 4
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Machine-learning force-field scoring rivals free-energy perturbation for congeneric ligand ranking across public benchmarks
2026 · Kevin Ryczko, Sarah Maier, et al. · ChemRxiv · 1
PyRESP: A flexible program for polarizable force field parameterizations
2022 · Shiji Zhao, Haixin Wei, et al. · Biophysical Journal · 1
Machine-learning force-field scoring rivals free-energy perturbation for congeneric ligand ranking across public benchmarks
2026 · Kevin Ryczko, Sarah Maier, et al. · ChemRxiv
Machine-learning force-field scoring rivals free-energy perturbation for congeneric ligand ranking across public benchmarks
2026 · Kevin Ryczko, Sarah Maier, et al. · ChemRxiv
Correction to “Development of a Pantetheine Force Field Library for Molecular Modeling”
2025 · Shiji Zhao, Andrew J. Schaub, et al. · Journal of Chemical Information and Modeling
Expression of Fusion Antibacterial Peptide in Recombinant Pichia pastoris and Its Bioactivity In Vitro
2018 · Jian-xue Tang, Yong-le Xiao, et al. · Zhongguo shengwu gongcheng zazhi
Works count: 23
Citation count: 2,764
H-index: 12
I10-index: 13
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