Author

Tuan Trieu

Observed names: Trieu, Tuan, Trieu, Tuan Anh

Institution: Weill Cornell Medicine

Observed institutions: Cornell University, Weill Cornell Medicine, University of Missouri

OpenAlex ID: A5084115288

Developmental chromatin programs determine oncogenic competence in melanoma

2021 · Arianna Baggiolini, Scott J. Callahan, et al. · Science · 158

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Spatial Genome Re-organization between Fetal and Adult Hematopoietic Stem Cells

2019 · Changya Chen, Wenbao Yu, et al. · Cell Reports · 78

Large-scale reconstruction of 3D structures of human chromosomes from chromosomal contact data

2014 · Tuan Trieu, Jianlin Cheng · Nucleic Acids Research · 71

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DeepMILO: a deep learning approach to predict the impact of non-coding sequence variants on 3D chromatin structure

2020 · Tuan Trieu, Alexander Martinez-Fundichely, et al. · Genome biology · 64

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MOGEN: a tool for reconstructing 3D models of genomes from chromosomal conformation capturing data

2015 · Tuan Trieu, Jianlin Cheng · Bioinformatics · 57

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3D genome structure modeling by Lorentzian objective function

2016 · Tuan Trieu, Jianlin Cheng · Nucleic Acids Research · 56

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Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing

2016 · Badri Adhikari, Tuan Trieu, et al. · BMC Genomics · 48

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GenomeFlow: a comprehensive graphical tool for modeling and analyzing 3D genome structure

2018 · Tuan Trieu, Oluwatosin Oluwadare, et al. · Bioinformatics · 36

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GMOL: An Interactive Tool for 3D Genome Structure Visualization

2016 · Jackson Nowotny, Avery Wells, et al. · Scientific Reports · 34

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Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

2021 · Jian Carrot-Zhang, Xiaotong Yao, et al. · Cell Reports · 32

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Hierarchical Reconstruction of High-Resolution 3D Models of Large Chromosomes

2019 · Tuan Trieu, Oluwatosin Oluwadare, et al. · Scientific Reports · 27

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Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

2021 · Jian Carrot-Zhang, Xiaotong Yao, et al. · Cell Reports · 24

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Iterative reconstruction of three-dimensional models of human chromosomes from chromosomal contact data

2015 · Jackson Nowotny, Sharif Ahmed, et al. · BMC Bioinformatics · 18

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Disruption of TAD hierarchy promotes LTR co-option in cancer

2025 · Elissa W. P. Wong, Merve Sahin, et al. · Nature Genetics · 6

3D Genome Structure Modeling by Lorentzian Objective Function

2017 · Tuan Trieu, Jianlin Cheng · ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) · 2

TAD hierarchy restricts poised LTR activation and loss of TAD hierarchy promotes LTR co-option in cancer

2024 · Elissa W. P. Wong, Merve Sahin, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1

Abstract 2443: Predicting the impact of somatic mutations on chromatin conformation using deep learning

2019 · Tuan Trieu, Ekta Khurana · Bioinformatics, Convergence Science, and Systems Biology

Abstract 2443: Predicting the impact of somatic mutations on chromatin conformation using deep learning

2019 · Tuan Trieu, Ekta Khurana · Cancer Research

3D genome structure reconstruction from chromosomal contact data

2017 · Trieu, Tuan Anh

Additional file 2: Figure S2. of Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing