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Tzu‐Ming Chu

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
2006 · Leming Shi, Leming Shi, et al. · Nature Biotechnology · 2,121
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
2014 · Zhenqiang Su, Reagan Kelly, et al. · Nature Biotechnology · 978
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The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
2010 · Leming Shi, Zhining Wen, et al. · Nature Biotechnology · 887
Global Analysis of Arabidopsis Gene Expression Uncovers a Complex Array of Changes Impacting Pathogen Response and Cell Cycle during Geminivirus Infection
2008 · José Trinidad Ascencio-Ibáñez, Rosangela Sozzani, et al. · PLANT PHYSIOLOGY · 576
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Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project
2006 · Tucker A Patterson, Edward K Lobenhofer, et al. · Nature Biotechnology · 492
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies
2008 · Leming Shi, Wendell D Jones, et al. · BMC Bioinformatics · 401
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Comparison of RNA-seq and microarray-based models for clinical endpoint prediction
2015 · Wenqian Zhang, Ying Yu, et al. · Genome biology · 392
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A systematic statistical linear modeling approach to oligonucleotide array experiments
2002 · Tzu-Ming Chu, Bruce Weir, et al. · Mathematical Biosciences · 192
A Comprehensive Statistical Analysis of Predicting In Vivo Hazard Using High-Throughput In Vitro Screening
2012 · Russell S. Thomas, Michael B. Black, et al. · Toxicological Sciences · 148
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Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data
2016 · Justin Guinney, Tao Wang, et al. · The Lancet Oncology · 135
Mixed-Model Reanalysis of Primate Data Suggests Tissue and Species Biases in Oligonucleotide-Based Gene Expression Profiles
2003 · Wen-Ping Hsieh, Tzu-Ming Chu, et al. · Genetics · 135
Relative Impact of Incorporating Pharmacokinetics on Predicting In Vivo Hazard and Mode of Action from High-Throughput In Vitro Toxicity Assays
2013 · Barbara A. Wetmore, John F. Wambaugh, et al. · Toxicological Sciences · 127
Evaluation of external RNA controls for the assessment of microarray performance
2006 · Weida Tong, Anne Bergstrom Lucas, et al. · Nature Biotechnology · 108
Transcript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion
2007 · Aleksandra Adomas, Gregory Heller, et al. · Tree Physiology · 81
Variation in transcript abundance during somatic embryogenesis in gymnosperms
2004 · C. Stasolla, P. V. Bozhkov, et al. · Tree Physiology · 81
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Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass
2013 · Charlotte M Wilson, Miguel Rodriguez, et al. · Biotechnology for Biofuels · 72
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Principal Variance Components Analysis: Estimating Batch Effects in Microarray Gene Expression Data
2009 · Jianying Li, Pierre R Bushel, et al. · Wiley series in probability and statistics · 69
Linking Ligand-Induced Alterations in Androgen Receptor Structure to Differential Gene Expression: A First Step in the Rational Design of Selective Androgen Receptor Modulators
2006 · Dmitri Kazmin, Tatiana Prytkova, et al. · Molecular Endocrinology · 69
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Receptor-Selective Coactivators as Tools to Define the Biology of Specific Receptor-Coactivator Pairs
2006 · Stéphanie Gaillard, Linda L. Grasfeder, et al. · Molecular Cell · 68
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Comparison of Microarrays and RNA-Seq for Gene Expression Analyses of Dose-Response Experiments
2013 · Michael B. Black, Bethany B. Parks, et al. · Toxicological Sciences · 64
Use of Short-term Transcriptional Profiles to Assess the Long-term Cancer-Related Safety of Environmental and Industrial Chemicals
2009 · Russell S. Thomas, Wenjun Bao, et al. · Toxicological Sciences · 50
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Cross-site comparison of gene expression data reveals high similarity.
2004 · Tzu-Ming Chu, Shibing Deng, et al. · Environmental Health Perspectives · 48
Comparison of transcriptional responses in liver tissue and primary hepatocyte cell cultures after exposure to hexahydro-1, 3, 5-trinitro-1, 3, 5-triazine
2006 · Edward J Perkins, Wenjun Bao, et al. · BMC Bioinformatics · 45
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The MAQC-II Project: A comprehensive study of common practices for the development and validation of microarray-based predictive models.
2010 · Leming Shi, Grant R. Campbell, et al. · 37
Comparison of Li–Wong and loglinear mixed models for the statistical analysis of oligonucleotide arrays
2004 · Tzu-Ming Chu, B.S. Weir, et al. · Bioinformatics · 23
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Works count: 39
Citation count: 7,366
H-index: 23
I10-index: 25
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