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R01 GM092706

Funded outputs count: 29
Funder award ID: R01 GM092706
OpenAlex ID: G1574433988
Multi-generational koala pedigree analysis reveals rapid changes in heritable provirus load associated with life history traits
2026 · Guilherme B. Neumann, Rachael Tarlinton, et al. · Nature Communications
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Retroviral integrations contribute to elevated host cancer rates during germline invasion
2021 · Gayle K. McEwen, David E. Alquezar-Planas, et al. · Nature Communications · 44
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Degradation and remobilization of endogenous retroviruses by recombination during the earliest stages of a germ-line invasion
2018 · Ulrike Löber, Matthew Hobbs, et al. · Proceedings of the National Academy of Sciences · 59
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Adaptation and conservation insights from the koala genome
2018 · Rebecca N. Johnson, Denis O’Meally, et al. · Nature Genetics · 262
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Transmission, Evolution, and Endogenization: Lessons Learned from Recent Retroviral Invasions
2017 · Alex D. Greenwood, Yasuko Ishida, et al. · Microbiology and Molecular Biology Reviews · 103
Long-read genome sequence assembly provides insight into ongoing retroviral invasion of the koala germline
2017 · Matthew Hobbs, Andrew King, et al. · Scientific Reports · 48
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Phylogeography of the Koala, (Phascolarctos cinereus), and Harmonising Data to Inform Conservation
2016 · Linda E. Neaves, Greta J. Frankham, et al. · PLoS ONE · 43
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Koalas (Phascolarctos cinereus) From Queensland Are Genetically Distinct From 2 Populations in Victoria
2016 · Christina T. Ruiz-Rodriguez, Yasuko Ishida, et al. · Journal of Heredity · 6
Endogenous Gibbon Ape Leukemia Virus Identified in a Rodent (Melomys burtoni subsp.) from Wallacea (Indonesia)
2016 · Niccolò Alfano, Johan Michaux, et al. · Journal of Virology · 33
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Bioinformatics analyses of non-coding genomic elements
2016 · Kai Zhao · Illinois Digital Environment for Access to Learning and Scholarship (University of Illinois at Urbana-Champaign)
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Comprehensive profiling of retroviral integration sites using target enrichment methods from historical koala samples without an assembled reference genome
2016 · Pin Cui, Ulrike Löber, et al. · PeerJ · 21
Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius
2016 · Jeffrey A. Rosenfeld, Darryl Reeves, et al. · Nature Communications · 108
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Evolutionary Relationships among Extinct and Extant Sloths: The Evidence of Mitogenomes and Retroviruses
2016 · Graham J. Slater, Pin Cui, et al. · Genome Biology and Evolution · 47
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Episodic Diversifying Selection Shaped the Genomes of Gibbon Ape Leukemia Virus and Related Gammaretroviruses
2015 · Niccolò Alfano, Sergios-Orestis Kolokotronis, et al. · Journal of Virology · 13
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Endogenous murine leukemia retroviral variation across wild European and inbred strains of house mouse
2015 · Stefanie Hartmann, Natascha Hasenkamp, et al. · BMC Genomics · 4
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Variation in koala microbiomes within and between individuals: effect of body region and captivity status
2015 · Niccoló Alfano, Alexandre Courtiol, et al. · Scientific Reports · 107
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SmileFinder: a resampling-based approach to evaluate signatures of selection from genome-wide sets of matching allele frequency data in two or more diploid populations
2015 · Wilfried M Guiblet, Kai Zhao, et al. · GigaScience · 374
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Sequence variation of koala retrovirus transmembrane protein p15E among koalas from different geographic regions
2014 · Yasuko Ishida, Chelsea McCallister, et al. · Virology · 16
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Hybridization Capture Using Short PCR Products Enriches Small Genomes by Capturing Flanking Sequences (CapFlank)
2014 · Kyriakos Tsangaras, Nathan Wales, et al. · PLoS ONE · 27
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Proliferation of Endogenous Retroviruses in the Early Stages of a Host Germ Line Invasion
2014 · Yasuko Ishida, Kai Zhao, et al. · Molecular Biology and Evolution · 81
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2014 · Geoffrey W. Pye, Rebecca N. Johnson, et al. · Technical Reports of the Australian Museum online
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The evolution of koala retroviruses: insights from other endogenous retroviruses
2014 · Alfred L. Roca, Alex D. Greenwood · Technical Reports of the Australian Museum online · 1
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Hybridization Capture Reveals Evolution and Conservation across the Entire Koala Retrovirus Genome
2014 · Kyriakos Tsangaras, Matthew C. Siracusa, et al. · PLoS ONE · 46
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Development of 14 microsatellite markers in the Queensland koala (Phascolarctos cinereus adustus) using next generation sequencing technology
2014 · Christina T. Ruiz-Rodriguez, Yasuko Ishida, et al. · Conservation Genetics Resources · 18
A novel endogenous betaretrovirus group characterized from polar bears (Ursus maritimus) and giant pandas (Ailuropoda melanoleuca)
2013 · Jens Mayer, Kyriakos Tsangaras, et al. · Virology · 13
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