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R25CA180993

Funded outputs count: 61
Funder award ID: R25CA180993
OpenAlex ID: G2649450220
A molecular cell atlas of mouse lemur, an emerging model primate
2025 · Antoine de Morree, Iwijn De Vlaminck, et al. · Nature · 13
Mouse lemur cell atlas informs primate genes, physiology and disease
2025 · Camille Ezran, Shixuan Liu, et al. · Nature · 7
A quantitative spatial cell-cell colocalizations framework enabling comparisons between in vitro assembloids and pathological specimens
2025 · Gina Bouchard, Weiruo Zhang, et al. · Nature Communications · 15
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Multiomic analysis of familial adenomatous polyposis reveals molecular pathways associated with early tumorigenesis
2024 · Edward D. Esplin, Casey Hanson, et al. · Nature Cancer · 17
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Phenotyping EMT and MET cellular states in lung cancer patient liquid biopsies at a personalized level using mass cytometry
2023 · Loukia G. Karacosta, Danny Pancirer, et al. · Scientific Reports · 11
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The colocatome as a spatial -omic reveals shared microenvironment features between tumour–stroma assembloids and human lung cancer
2023 · Gina Bouchard, Weiruo Zhang, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
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Supplementary Data from Multiomics Analysis of Spatially Distinct Stromal Cells Reveals Tumor-Induced O-Glycosylation of the CDK4–pRB Axis in Fibroblasts at the Invasive Tumor Edge
2023 · Gina Bouchard, Fernando Jose Garcia-Marques, et al.
Most cancers carry a substantial deleterious load due to Hill-Robertson interference
2022 · Susanne Tilk, Svyatoslav Tkachenko, et al. · eLife · 33
Inferring gene expression from cell-free DNA fragmentation profiles
2022 · Mohammad Shahrokh Esfahani, Emily G. Hamilton, et al. · Nature Biotechnology · 221
Variation of Immune Cell Responses in Humans Reveals Sex-Specific Coordinated Signaling Across Cell Types
2022 · Gabriela K. Fragiadakis, Zachary B. Bjornson-Hooper, et al. · Frontiers in Immunology · 8
A Comprehensive Atlas of Immunological Differences Between Humans, Mice, and Non-Human Primates
2022 · Zachary B. Bjornson-Hooper, Gabriela K. Fragiadakis, et al. · Frontiers in Immunology · 214
The SpliZ generalizes ‘percent spliced in’ to reveal regulated splicing at single-cell resolution
2022 · Julia Eve Olivieri, Roozbeh Dehghannasiri, et al. · Nature Methods · 40
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Multiomics Analysis of Spatially Distinct Stromal Cells Reveals Tumor-Induced O-Glycosylation of the CDK4–pRB Axis in Fibroblasts at the Invasive Tumor Edge
2021 · Gina Bouchard, Fernando Jose Garcia-Marques, et al. · Cancer Research · 31
Detecting Liquid Remnants of Solid Tumors: Circulating Tumor DNA Minimal Residual Disease
2021 · Everett J. Moding, Barzin Y. Nabet, et al. · Cancer Discovery · 321
RNA splicing programs define tissue compartments and cell types at single-cell resolution
2021 · Julia Eve Olivieri, Roozbeh Dehghannasiri, et al. · eLife · 73
Specific splice junction detection in single cells with SICILIAN
2021 · Roozbeh Dehghannasiri, Julia Eve Olivieri, et al. · Genome biology · 25
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Multi-Omics Analysis of Fibroblasts from the Invasive Tumor Edge Reveals that Tumor-Stroma Crosstalk Induces O-glycosylation of the CDK4-pRB Axis
2021 · Gina Bouchard, Fernando Jose Garcia Marques, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
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Automated Identification of Adults at Risk for In-Hospital Clinical Deterioration
2020 · Gabriel J. Escobar, Vincent X. Liu, et al. · New England Journal of Medicine · 311
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Predicting preventable hospital readmissions with causal machine learning
2020 · Ben J. Marafino, Alejandro Schuler, et al. · Health Services Research · 27
Assessment of Value of Neighborhood Socioeconomic Status in Models That Use Electronic Health Record Data to Predict Health Care Use Rates and Mortality
2020 · Alejandro Schuler, Liam O’Súilleabháin, et al. · JAMA Network Open · 17
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Noninvasive Early Identification of Therapeutic Benefit from Immune Checkpoint Inhibition
2020 · Barzin Y. Nabet, Mohammad S. Esfahani, et al. · Cell · 347
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Integrating genomic features for non-invasive early lung cancer detection
2020 · Jacob J. Chabon, Emily G. Hamilton, et al. · Nature · 686
Circulating Tumor DNA Analysis to Assess Risk of Progression after Long-term Response to PD-(L)1 Blockade in NSCLC
2020 · Matthew D. Hellmann, Barzin Y. Nabet, et al. · Clinical Cancer Research · 125
How Confident Are We About Observational Findings in Health Care: A Benchmark Study
2020 · Martijn J. Schuemie, M. Soledad Cepede, et al. · Harvard Data Science Review · 57
Association Between Peripheral Blood Oxygen Saturation (SpO 2 )/Fraction of Inspired Oxygen (FiO 2 ) Ratio Time at Risk and Hospital Mortality in Mechanically Ventilated Patients
2020 · Jason Y Adams, Angela J Rogers, et al. · The Permanente Journal · 27
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