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Grant C-1792

Funded outputs count: 30
Funder award ID: Grant C-1792
OpenAlex ID: G4152014458
Temporally Correlated Active Forces Drive Segregation and Enhanced Dynamics in Chromosome Polymers
2024 · Sumitabha Brahmachari, Tomer Markovich, et al. · PRX Life · 28
Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample
2024 · Marcela Sandoval-Velasco, Olga Dudchenko, et al. · Cell · 52
RACER-m leverages structural features for sparse T cell specificity prediction
2024 · Ailun Wang, Xingcheng Lin, et al. · Science Advances · 22
An associative memory Hamiltonian model for DNA and nucleosomes
2023 · Weiqi Lu, José N. Onuchic, et al. · PLoS Computational Biology · 3
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Structural reorganization and relaxation dynamics of axially stressed chromosomes
2023 · Benjamin S. Ruben, Sumitabha Brahmachari, et al. · Biophysical Journal · 15
Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues
2023 · Vinícius G. Contessoto, Olga Dudchenko, et al. · Nature Communications · 28
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BAP1 is a novel regulator of HIF-1α
2023 · Angela Bononi, Qian Wang, et al. · Proceedings of the National Academy of Sciences · 30
Road-blocker HSP disease mutation disrupts pre-organization for ATP hydrolysis in kinesin through a second sphere control
2022 · Rabindra Nath Manna, José N. Onuchic, et al. · Proceedings of the National Academy of Sciences · 6
BAP1 forms a trimer with HMGB1 and HDAC1 that modulates gene × environment interaction with asbestos
2021 · Flavia Novelli, Angela Bononi, et al. · Proceedings of the National Academy of Sciences · 36
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SMOG 2 and OpenSMOG: Extending the limits of structure‐based models
2021 · Antonio B. de Oliveira, Vinícius G. Contessoto, et al. · Protein Science · 39
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Sterically confined rearrangements of SARS-CoV-2 Spike protein control cell invasion
2021 · Esteban Dodero-Rojas, José N. Onuchic, et al. · eLife · 60
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3D genomics across the tree of life reveals condensin II as a determinant of architecture type
2021 · Claire Hoencamp, Olga Dudchenko, et al. · Science · 262
Exploring Energy Landscapes of Intrinsically Disordered Proteins: Insights into Functional Mechanisms
2021 · Antonio B. Oliveira Junior, Xingcheng Lin, et al. · Journal of Chemical Theory and Computation · 26
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Exploring chromosomal structural heterogeneity across multiple cell lines
2020 · Ryan R. Cheng, Vinicius Contessoto, et al. · eLife · 58
Enhancing intracellular accumulation and target engagement of PROTACs with reversible covalent chemistry
2020 · Wen-Hao Guo, Xiaoli Qi, et al. · Nature Communications · 221
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Coarse-Grained Modeling of DNA Plectoneme Formation in the Presence of Base-Pair Mismatches
2020 · Parth Rakesh Desai, Sumitabha Brahmachari, et al. · Biophysical Journal · 3
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Mesoscale liquid model of chromatin recapitulates nuclear order of eukaryotes
2019 · Rabia Laghmach, Michele Di Pierro, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2
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Inner workings of gene folding
2019 · Michele Di Pierro · Proceedings of the National Academy of Sciences · 11
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Deciphering the structure of the condensin protein complex
2018 · Dana Krepel, Ryan R. Cheng, et al. · Proceedings of the National Academy of Sciences · 26
Faculty Opinions recommendation of De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture.
2018 · Nikolay Dokholyan, Venkat Reddy Chirasani · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
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Designing bacterial signaling interactions with coevolutionary landscapes
2018 · R. R. Cheng, E. Haglund, et al. · PLoS ONE · 10
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A Statistical Thermodynamic Model for Ligands Interacting With Ion Channels: Theoretical Model and Experimental Validation of the KCNQ2 Channel
2018 · Fang Bai, Xiaoping Pi, et al. · Frontiers in Pharmacology · 5
How EF-Tu can contribute to efficient proofreading of aa-tRNA by the ribosome
2016 · Jeffrey K. Noel, Paul C. Whitford · Nature Communications · 65
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Breast cancer tumorigenicity is dependent on high expression levels of NAF-1 and the lability of its Fe-S clusters
2016 · Merav Darash-Yahana, Yair Pozniak, et al. · Proceedings of the National Academy of Sciences · 80
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Lowered pH Leads to Fusion Peptide Release and a Highly Dynamic Intermediate of Influenza Hemagglutinin
2016 · Xingcheng Lin, Jeffrey K. Noel, et al. · The Journal of Physical Chemistry B · 17
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