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RM1‐HG006193

Funded outputs count: 140
Funder award ID: RM1‐HG006193
OpenAlex ID: G4186406324
Single-cell image-based screens identify host regulators of Ebola virus infection dynamics
2025 · Rebecca J. Carlson, J. J. Patten, et al. · Nature Microbiology · 12
High-content image-based pooled screens reveal regulators of synaptogenesis
2025 · Anna Le, Thomas Biederer, et al. · Cell Reports · 3
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Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics
2025 · Inbal Avraham-Davidi, Simon Mages, et al. · eLife · 3
Classification and functional characterization of regulators of intracellular STING trafficking identified by genome-wide optical pooled screening
2024 · Matteo Gentili, Rebecca J. Carlson, et al. · Cell Systems · 12
Catalase activity deficiency sensitizes multidrug-resistant Mycobacterium tuberculosis to the ATP synthase inhibitor bedaquiline
2024 · Boatema Ofori-Anyinam, Meagan Hamblin, et al. · Nature Communications · 23
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Dictionary of immune responses to cytokines at single-cell resolution
2023 · Ang Cui, Teddy Huang, et al. · Nature · 362
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Scalable genetic screening for regulatory circuits using compressed Perturb-seq
2023 · Douglas Yao, Loic Binan, et al. · Nature Biotechnology · 97
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Single-Cell RNA Sequencing Reveals That Adaptation of Human Aortic Endothelial Cells to Antiproliferative Therapies Is Modulated by Flow-Induced Shear Stress
2023 · Antonio G. Salazar-Martín, Aditya S. Kalluri, et al. · Arteriosclerosis Thrombosis and Vascular Biology · 15
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High-throughput RNA isoform sequencing using programmed cDNA concatenation
2023 · Aziz M. Al’Khafaji, Jonathan T. Smith, et al. · Nature Biotechnology · 196
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A genome-wide optical pooled screen reveals regulators of cellular antiviral responses
2023 · Rebecca J. Carlson, Michael D. Leiken, et al. · Proceedings of the National Academy of Sciences · 39
TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics
2023 · Simon Mages, Noa Moriel, et al. · Nature Biotechnology · 90
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Compressed Perturb-seq: highly efficient screens for regulatory circuits using random composite perturbations
2023 · Douglas Yao, Loic Binan, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 10
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A transcription factor atlas of directed differentiation
2023 · Julia Joung, Sai Ma, et al. · Cell · 220
Profiling Transcriptional Heterogeneity with Seq-Well S3: A Low-Cost, Portable, High-Fidelity Platform for Massively Parallel Single-Cell RNA-Seq
2022 · Riley S. Drake, Martin Arreola Villanueva, et al. · Methods in molecular biology · 8
The phenotypic landscape of essential human genes
2022 · Luke Funk, Kuan-Chung Su, et al. · Cell · 169
Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing
2022 · Sean K. Simmons, Gila Lithwick-Yanai, et al. · Nature Biotechnology · 50
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The evolution, evolvability and engineering of gene regulatory DNA
2022 · Eeshit Dhaval Vaishnav, Carl G. de Boer, et al. · Nature · 272
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Pooled genetic perturbation screens with image-based phenotypes
2022 · David Feldman, Luke Funk, et al. · Nature Protocols · 59
Single-cell profiling of proteins and chromatin accessibility using PHAGE-ATAC
2021 · Evgenij Fiskin, Caleb A. Lareau, et al. · Nature Biotechnology · 67
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Joint single-cell measurements of nuclear proteins and RNA in vivo
2021 · Hattie Chung, Christopher N. Parkhurst, et al. · Nature Methods · 143
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Measuring kinetics and metastatic propensity of CTCs by blood exchange between mice
2021 · Bashar Hamza, Alex B. Miller, et al. · Nature Communications · 45
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A cell-free nanobody engineering platform rapidly generates SARS-CoV-2 neutralizing nanobodies
2021 · Xun Chen, Matteo Gentili, et al. · Nature Communications · 91
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Live cell tagging tracking and isolation for spatial transcriptomics using photoactivatable cell dyes
2021 · Alex S Genshaft, Carly G. K. Ziegler, et al. · Nature Communications · 43
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Expression of Foxp3 by T follicular helper cells in end-stage germinal centers
2021 · Johanne T. Jacobsen, Wei Hu, et al. · Science · 135
Ongoing global and regional adaptive evolution of SARS-CoV-2
2021 · Nash D. Rochman, Yuri I. Wolf, et al. · Proceedings of the National Academy of Sciences · 253
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