Award

308291-00001

Funder: U.S. Department of Agriculture

Funded outputs count: 6

Funder award ID: 308291-00001

OpenAlex ID: G8367057504

R2DT: a comprehensive platform for visualizing RNA secondary structure

2025 · Holly McCann, Caeden D Meade, et al. · Nucleic Acids Research · 28

Direct nanopore RNA sequencing of umbra-like virus-infected plants reveals long non-coding RNAs, specific cleavage sites, D-RNAs, foldback RNAs, and temporal- and tissue-specific profiles

2024 · Philip Z Johnson, Jason M Needham, et al. · NAR Genomics and Bioinformatics · 8

Umbravirus-like RNA viruses are capable of independent systemic plant infection in the absence of encoded movement proteins

2024 · Xiaobao Ying, Sayanta Bera, et al. · PLoS Biology · 30

-1 Programmed ribosomal frameshifting in Class 2 umbravirus-like RNAs uses multiple long-distance interactions to shift between active and inactive structures and destabilize the frameshift stimulating element

2023 · Anna A Mikkelsen, Feng Gao, et al. · Nucleic Acids Research · 13

RNAcanvas: interactive drawing and exploration of nucleic acid structures

2023 · Philip Z Johnson, Anne E Simon · Nucleic Acids Research · 97

Conserved Structure Associated with Different 3′CITEs Is Important for Translation of Umbraviruses

2023 · Sayanta Bera, Muhammad Ilyas, et al. · Viruses · 9