Keyword

base stacking

Description: Base stacking is the stabilizing interaction between adjacent nucleobases in nucleic acid structures, studied in molecular biophysics and structural chemistry.

Primary topic: DNA and Nucleic Acid Chemistry (57%)

OpenAlex ID: keywords/base-stacking

Adaptive Recognition by Nucleic Acid Aptamers

2000 · Thomas Hermann, Dinshaw J. Patel · Science · 1,653

DNA-Binding Specificities of Human Transcription Factors

2013 · Arttu Jolma, Jian Yan, et al. · Cell · 1,263

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Base-stacking and base-pairing contributions into thermal stability of the DNA double helix

2006 · P. Yakovchuk · Nucleic Acids Research · 997

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Electron Transfer Between Bases in Double Helical DNA

1999 · Shana O. Kelley, Jacqueline K. Barton · Science · 922

Assessment of the Performance of the M05−2X and M06−2X Exchange-Correlation Functionals for Noncovalent Interactions in Biomolecules

2008 · Edward G. Hohenstein, Samuel T. Chill, et al. · Journal of Chemical Theory and Computation · 914

Structure of a B-DNA dodecamer

1981 · Richard E. Dickerson, Horace R. Drew · Journal of Molecular Biology · 895

Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxyoligonucleolides

1970 · Charles R. Cantor, Myron M. Warshaw, et al. · Biopolymers · 866

Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin

1994 · Chris Oubridge, Nobutoshi Ito, et al. · Nature · 831

3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures

2008 · Xiang-Jun Lu, Wilma K Olson · Nature Protocols · 652

Theoretical Studies of GG-Specific Photocleavage of DNA via Electron Transfer: Significant Lowering of Ionization Potential and 5‘-Localization of HOMO of Stacked GG Bases in B-Form DNA

1996 · Hiroshi Sugiyama, Isao Saito · Journal of the American Chemical Society · 627

Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops

1991 · Hans A. Heus, Arthur Pardi · Science · 620

Stereochemistry of nucleic acids and their constituents. IV. Allowed and preferred conformations of nucleosides, nucleoside mono‐, di‐, tri‐, tetraphosphates, nucleic acids and polynucleotides

1969 · M. Sundaralingam · Biopolymers · 611

Pseudouridine in RNA: What, Where, How, and Why

2000 · Michael Charette, Michael W. Gray · IUBMB Life · 579

Mechanics of sequence-dependent stacking of bases in B-DNA

1982 · C.R. Calladine · Journal of Molecular Biology · 568

Hydrogen Bonding, Base Stacking, and Steric Effects in DNA Replication

2001 · Eric T. Kool · Annual Review of Biophysics and Biomolecular Structure · 505

Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp

1983 · Matthew Petersheim, Douglas H. Turner · Biochemistry · 500

The stability of helical polynucleotides: Base contributions

1962 · Howard DeVoe, Ignacio Tinoco · Journal of Molecular Biology · 491

The High-Resolution Crystal Structure of a Parallel-Stranded Guanine Tetraplex

1994 · Gerard Laughlan, Alastair I. H. Murchie, et al. · Science · 482

Thermal difference spectra: a specific signature for nucleic acid structures

2005 · J.-L. Mergny · Nucleic Acids Research · 470

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model

2011 · Thomas E. Ouldridge, Ard A. Louis, et al. · The Journal of Chemical Physics · 466

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Base stacking controls excited-state dynamics in A·T DNA

2005 · Carlos E. Crespo-Hernández, Boiko Cohen, et al. · Nature · 462

Sequence-dependent DNA Structure

1993 · Christopher A. Hunter · Journal of Molecular Biology · 449

Crystal structure of a hairpin ribozyme–inhibitor complex with implications for catalysis

2001 · Peter B. Rupert, Adrian R. Ferré-D'Amaré · Nature · 447

Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases

2001 · Ji?� ?poner, Jerzy Leszczynski, et al. · Biopolymers · 431

Solution structure of an unusually stable RNA hairpin, 5GGAC(UUCG)GUCC

1990 · Chaejoon Cheong, Gabriele Varani, et al. · Nature · 420

Works count: 2,975

Citation count: 108,100