Keyword

BioBERT

Description: BioBERT is a biomedical language model based on the BERT neural-network architecture, pretrained to process biomedical text for natural language tasks.

Primary topic: Biomedical Text Mining and Ontologies (36%)

Wikidata ID: wiki/Q112063555

OpenAlex ID: keywords/biobert

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

2019 · Jinhyuk Lee, Wonjin Yoon, et al. · Bioinformatics · 7,189

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Sources of bias in artificial intelligence that perpetuate healthcare disparities—A global review

2022 · Leo Anthony Celi, Jacqueline Cellini, et al. · PLOS Digital Health · 567

AMMU: A survey of transformer-based biomedical pretrained language models

2021 · Katikapalli Subramanyam Kalyan, Ajit Rajasekharan, et al. · Journal of Biomedical Informatics · 278

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Building a PubMed knowledge graph

2020 · Jian Xu, Sunkyu Kim, et al. · Scientific Data · 195

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Fine-Tuning Bidirectional Encoder Representations From Transformers (BERT)–Based Models on Large-Scale Electronic Health Record Notes: An Empirical Study

2019 · Fei Li, Yonghao Jin, et al. · JMIR Medical Informatics · 160

Adverse effects of topical antiglaucomatous medications on the conjunctiva.

1993 · D Broadway, I Grierson, et al. · British Journal of Ophthalmology · 143

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A Neural Named Entity Recognition and Multi-Type Normalization Tool for Biomedical Text Mining

2019 · Donghyeon Kim, Jinhyuk Lee, et al. · IEEE Access · 127

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BERT-based Ranking for Biomedical Entity Normalization

2019 · Ji, Zongcheng, Wei, Qiang, et al. · PubMed · 125

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Transformer models in biomedicine

2024 · Sumit Madan, Manuel Lentzen, et al. · BMC Medical Informatics and Decision Making · 122

Probing Biomedical Embeddings from Language Models

2019 · Qiao Jin, Bhuwan Dhingra, et al. · 119

Increase of stillbirth and decrease of late preterm infants during the COVID-19 pandemic lockdown

2020 · Mario De Curtis, Leonardo Villani, et al. · Archives of Disease in Childhood Fetal & Neonatal · 116

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Biomedical and clinical English model packages for the Stanza Python NLP library

2021 · Yuhao Zhang, Yuhao Zhang, et al. · Journal of the American Medical Informatics Association · 112

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Infusing Disease Knowledge into BERT for Health Question Answering, Medical Inference and Disease Name Recognition

2020 · Yun He, Ziwei Zhu, et al. · Conference on Empirical Methods in Natural Language Processing (EMNLP) · 108

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Extracting drug-drug interactions from texts with BioBERT and multiple entity-aware attentions

2020 · Yu Zhu, Lishuang Li, et al. · Journal of Biomedical Informatics · 97

Evaluating the ChatGPT family of models for biomedical reasoning and classification

2023 · Shan Chen, Yingya Li, et al. · Journal of the American Medical Informatics Association · 91

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Comparison of BERT implementations for natural language processing of narrative medical documents

2022 · Alexander Turchin, Stanislav Masharsky, et al. · Informatics in Medicine Unlocked · 90

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Pre-trained Language Model for Biomedical Question Answering

2020 · Wonjin Yoon, Jinhyuk Lee, et al. · Communications in computer and information science · 72

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Task-Specific Transformer-Based Language Models in Health Care: Scoping Review

2024 · Ha Na Cho, Tae Joon Jun, et al. · JMIR Medical Informatics · 71

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BioBERT Based Named Entity Recognition in Electronic Medical Record

2019 · Xin Yu, Wenshen Hu, et al. · International Conference on Information Technology in Medicine and Education · 66

Biomedical-domain pre-trained language model for extractive summarization

2020 · Yongping Du, Qingxiao Li, et al. · Knowledge-Based Systems · 64

AI-powered topic modeling: comparing LDA and BERTopic in analyzing opioid-related cardiovascular risks in women

2025 · Li Ma, Ru Chen, et al. · Experimental Biology and Medicine · 61

Multiple features for clinical relation extraction: A machine learning approach

2020 · Ilseyar Alimova, Elena Tutubalina · Journal of Biomedical Informatics · 60

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Pandemics are catalysts of scientific novelty: Evidence from COVID ‐19

2021 · Meijun Liu, Yi Bu, et al. · Journal of the Association for Information Science and Technology · 57

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Deep learning based classification of multi-label chest X-ray images via dual-weighted metric loss

2023 · Yufei Jin, Huijuan Lu, et al. · Computers in Biology and Medicine · 55

Causal relationship extraction from biomedical text using deep neural models: A comprehensive survey

2021 · Abbas Akkasi, Mari-Francine Moens · Journal of Biomedical Informatics · 55

Works count: 1,065

Citation count: 14,270