Keyword

Boolean networks

Description: Discrete mathematical models in which Boolean-valued variables update according to logical rules, used to study dynamic systems such as gene-regulatory networks.

Primary topic: Gene Regulatory Network Analysis (52%)

Wikidata ID: wiki/Q585230

OpenAlex ID: keywords/boolean-networks

Modeling and Simulation of Genetic Regulatory Systems: A Literature Review

2002 · Hidde de Jong · Journal of Computational Biology · 2,663

Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks

2002 · Ilya Shmulevich, Edward R. Dougherty, et al. · Bioinformatics · 1,609

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Reveal, a general reverse engineering algorithm for inference of genetic network architectures.

1998 · S Liang, S Fuhrman, et al. · PubMed · 955

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Genetic network inference: from co-expression clustering to reverse engineering

2000 · Patrik D’haeseleer, Shoudan Liang, et al. · Bioinformatics · 944

Analysis and Control of Boolean Networks: A Semi-tensor Product Approach

2011 · Hongsheng Qi, Daizhan Cheng · Medical Entomology and Zoology · 942

The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster

2003 · Réka Albert, Hans G Othmer · Journal of Theoretical Biology · 942

Analysis and Control of Boolean Networks

2010 · Daizhan Cheng, Hongsheng Qi, et al. · Communications and control engineering/Communications and control engineering series · 752

A Linear Representation of Dynamics of Boolean Networks

2010 · Daizhan Cheng, Hongsheng Qi · IEEE Transactions on Automatic Control · 697

Identification of Genetic Networks From a Small Number of Gene Expression Patterns Under the Boolean Network Model

1998 · Tatsuya AKUTSU, Satoru MIYANO, et al. · Pacific Symposium on Biocomputing (PSB) · 691

FlowMap: an optimal technology mapping algorithm for delay optimization in lookup-table based FPGA designs

1994 · J. Cong, Yuzheng Ding · IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems · 681

Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle

2006 · Adrien Fauré, Aurélien Naldi, et al. · Bioinformatics · 642

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From Boolean to probabilistic Boolean networks as models of genetic regulatory networks

2002 · I. Shmulevich, E.R. Dougherty, et al. · Proceedings of the IEEE · 642

A deoxyribozyme-based molecular automaton

2003 · Milan N Stojanovic, Darko Stefanovic · Nature Biotechnology · 625

Shape-Dependent Control of Cell Growth, Differentiation, and Apoptosis: Switching between Attractors in Cell Regulatory Networks

2000 · Sui Huang, Donald E. Ingber · Experimental Cell Research · 606

Control of Boolean networks: Hardness results and algorithms for tree structured networks

2006 · Tatsuya Akutsu, Morihiro Hayashida, et al. · Journal of Theoretical Biology · 572

Random Boolean network models and the yeast transcriptional network

2003 · Stuart Kauffman, Carsten Peterson, et al. · Proceedings of the National Academy of Sciences · 553

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Boolean Network Model Predicts Cell Cycle Sequence of Fission Yeast

2008 · Maria I. Davidich, Stefan Bornholdt · PLoS ONE · 491

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An Introduction to Semi-Tensor Product of Matrices and Its Applications

2011 · Daizhan Cheng, Hongsheng Qi, et al. · WORLD SCIENTIFIC eBooks · 482

BoolNet—an R package for generation, reconstruction and analysis of Boolean networks

2010 · Christoph Müssel, Martin Hopfensitz, et al. · Bioinformatics · 429

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Observability, Reconstructibility and State Observers of Boolean Control Networks

2012 · Ettore Fornasini, Maria Elena Valcher · IEEE Transactions on Automatic Control · 428

Boolean dynamics of networks with scale-free topology

2003 · Maximino Aldana · Physica D Nonlinear Phenomena · 400

A methodology for the structural and functional analysis of signaling and regulatory networks

2006 · Steffen Klamt, Julio Saez-Rodriguez, et al. · BMC Bioinformatics · 396

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Boolean network models of cellular regulation: prospects and limitations

2008 · Stefan Bornholdt · Journal of The Royal Society Interface · 395

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Stability and stabilization of Boolean networks

2010 · Daizhan Cheng, Hongsheng Qi, et al. · International Journal of Robust and Nonlinear Control · 390

Image encryption algorithm for synchronously updating Boolean networks based on matrix semi-tensor product theory

2019 · Xingyuan Wang, Suo Gao · Information Sciences · 383

Works count: 3,931

Citation count: 68,730