Keyword

cell segmentation

Description: The identification and delineation of individual cell boundaries in microscopy or histopathology images for biological analysis.

Primary topic: Cell Image Analysis Techniques (58%)

OpenAlex ID: keywords/cell-segmentation

Cellpose: a generalist algorithm for cellular segmentation

2020 · Carsen Stringer, Tim Wang, et al. · Nature Methods · 4,345

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Cell Detection with Star-Convex Polygons

2018 · Uwe Schmidt, Martin Weigert, et al. · Lecture notes in computer science · 1,821

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Cellpose 2.0: how to train your own model

2022 · Marius Pachitariu, Carsen Stringer · Nature Methods · 1,395

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Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning

2021 · Noah F. Greenwald, Geneva Miller, et al. · Nature Biotechnology · 950

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High-plex imaging of RNA and proteins at subcellular resolution in fixed tissue by spatial molecular imaging

2022 · Shanshan He, Ruchir Bhatt, et al. · Nature Biotechnology · 804

EBImage—an R package for image processing with applications to cellular phenotypes

2010 · Grégoire Pau, Florian Fuchs, et al. · Bioinformatics · 797

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Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue

2013 · Michael J. Gerdes, Christopher J. Sevinsky, et al. · Proceedings of the National Academy of Sciences · 730

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MorphoGraphX: A platform for quantifying morphogenesis in 4D

2015 · Pierre Barbier de Reuille, Anne-Lise Routier-Kierzkowska, et al. · eLife · 573

An objective comparison of cell-tracking algorithms

2017 · Vladimír Ulman, Martin Maška, et al. · Nature Methods · 571

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Image analysis and machine learning for detecting malaria

2018 · Mahdieh Poostchi, Kamolrat Silamut, et al. · Translational research · 561

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Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments

2016 · David A. Van Valen, Takamasa Kudo, et al. · PLoS Computational Biology · 556

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All-IDB: The acute lymphoblastic leukemia image database for image processing

2011 · Ruggero Donida Labati, Vincenzo Piuri, et al. · Proceedings - International Conference on Image Processing · 551

Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review

2016 · Fuyong Xing, Lin Yang · IEEE Reviews in Biomedical Engineering · 519

Cell Segmentation: 50 Years Down the Road [Life Sciences]

2012 · Erik Meijering · IEEE Signal Processing Magazine · 473

Cell segmentation in imaging-based spatial transcriptomics

2021 · Viktor Petukhov, Rosalind J. Xu, et al. · Nature Biotechnology · 405

Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy

2011 · Jonathan W Young, James C W Locke, et al. · Nature Protocols · 354

CellViT: Vision Transformers for precise cell segmentation and classification

2024 · Fabian Hörst, Moritz Rempe, et al. · Medical Image Analysis · 344

Automated Segmentation, Classification, and Tracking of Cancer Cell Nuclei in Time-Lapse Microscopy

2006 · X. Chen, X. Zhou, et al. · IEEE Transactions on Biomedical Engineering · 332

Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces

2005 · A. Dufour, V. Shinin, et al. · IEEE Transactions on Image Processing · 309

Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution

2010 · Romain Fernandez, Pradeep Das, et al. · Nature Methods · 305

LIVECell—A large-scale dataset for label-free live cell segmentation

2021 · Christoffer Edlund, Timothy R. Jackson, et al. · Nature Methods · 303

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Segmentation of Clustered Nuclei With Shape Markers and Marking Function

2008 · Jierong Cheng, J.C. Rajapakse · IEEE Transactions on Biomedical Engineering · 303

Cell Detection with Star-Convex Polygons

2018 · Schmidt, U., Weigert, M., et al. · MPG.PuRe (Max Planck Society) · 295

Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data

2014 · Fernando Amat, William Lemon, et al. · Nature Methods · 290

Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing

2002 · C. Zimmer, E. Labruyere, et al. · IEEE Transactions on Medical Imaging · 286

Works count: 6,029

Citation count: 63,340