Keyword

DNA sequence visualization

Description: Methods for displaying DNA nucleotide sequences or their features graphically to support analysis and comparison in bioinformatics.

Primary topic: Fractal and DNA sequence analysis (69%)

OpenAlex ID: keywords/dna-sequence-visualization

Artemis: sequence visualization and annotation

2000 · Kim Rutherford, Julian Parkhill, et al. · Bioinformatics · 3,081

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Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN

2003 · D. Farre · Nucleic Acids Research · 1,036

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Chaos game representation of gene structure

1990 · H.Joel Jeffrey · Nucleic Acids Research · 729

Logomaker: beautiful sequence logos in Python

2019 · Ammar Tareen, Justin B Kinney · Bioinformatics · 528

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H curves, a novel method of representation of nucleotide series especially suited for long DNA sequences.

1983 · E Hamori, J Ruskin · Journal of Biological Chemistry · 314

Fluorescence in situ hybridization

1993 · C.M. Price · Blood Reviews · 302

ApE, A Plasmid Editor: A Freely Available DNA Manipulation and Visualization Program

2022 · M. Wayne Davis, Erik M. Jorgensen · Frontiers in Bioinformatics · 265

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Z Curves, An Intutive Tool for Visualizing and Analyzing the DNA Sequences

1994 · Ren Zhang, Chun-Ting Zhang · Journal of Biomolecular Structure and Dynamics · 258

A simple way to look at DNA

1986 · Michael A. Gates · Journal of Theoretical Biology · 186

Random walk and gap plots of DNA sequences

1995 · P.M. Leong, S. Morgenthaler · Computer applications in the biosciences · 123

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2000 · Bai-lin Hao, H.C. Lee, et al. · Chaos Solitons & Fractals · 119

Nucleotide, dinucleotide and trinucleotide frequencies explain patterns observed in chaos game representations of DNA sequences

1993 · Nick Goldman · Nucleic Acids Research · 108

Novel techniques of graphical representation and analysis of DNA sequences—A review

1998 · A. Roy, C. Raychaudhury, et al. · Journal of Biosciences · 90

Visualization and analysis of DNA sequences using DNA walks

2004 · John A Berger, Sanjit K Mitra, et al. · Journal of the Franklin Institute · 82

Compact 2-D graphical representation of DNA

2003 · Milan Randić, Marjan Vračko, et al. · Chemical Physics Letters · 76

DB-Curve: a novel 2D method of DNA sequence visualization and representation

2003 · Yonghui Wu, Alan Wee-Chung Liew, et al. · Chemical Physics Letters · 75

Highly compact 2D graphical representation of DNA sequences

2004 · M. Randić, J. Zupan · SAR and QSAR in environmental research · 58

A class of new 2-D graphical representation of DNA sequences and their application

2004 · Yu-hua Yao, Tian-ming Wang · Chemical Physics Letters · 55

Spatial representation of symbolic sequences through iterative function systems

1999 · P. Tino · IEEE Transactions on Systems Man and Cybernetics - Part A Systems and Humans · 55

Application of 2-D graphical representation of DNA sequence

2005 · Bo Liao, Mingshu Tan, et al. · Chemical Physics Letters · 51

DV-Curve: a novel intuitive tool for visualizing and analyzing DNA sequences

2009 · Zhu-Jin Zhang · Bioinformatics · 50

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BioVR: a platform for virtual reality assisted biological data integration and visualization

2019 · Jimmy F. Zhang, Alex R. Paciorkowski, et al. · BMC Bioinformatics · 49

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A 3D graphical representation of DNA sequences and its application

2006 · Bo Liao, Kequan Ding · Theoretical Computer Science · 44

Graphical Representation for DNA Sequences via Joint Diagonalization of Matrix Pencil

2013 · Hong-Jie Yu, De-Shuang Huang · IEEE Journal of Biomedical and Health Informatics · 34

Scribl: an HTML5 Canvas-based graphics library for visualizing genomic data over the web

2012 · Chase A. Miller, Jon Anthony, et al. · Bioinformatics · 27

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Works count: 228

Citation count: 8,466