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Keyword

enzyme function prediction

Description: Computational inference of an enzyme’s biochemical function from sequence, structure, or other molecular information.
OpenAlex ID: keywords/enzyme-function-prediction
Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks
2015 · John A. Gerlt, Jason T. Bouvier, et al. · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · 805
Current status and applications of genome-scale metabolic models
2019 · Changdai Gu, Gi Bae Kim, et al. · Genome biology · 789
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COFACTOR: an accurate comparative algorithm for structure-based protein function annotation
2012 · Ambrish Roy, Jianyi Yang, et al. · Nucleic Acids Research · 707
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Distinguishing Enzyme Structures from Non-enzymes Without Alignments
2003 · Paul D. Dobson, Andrew J. Doig · Journal of Molecular Biology · 579
Enzyme function prediction using contrastive learning
2023 · Tianhao Yu, Haiyang Cui, et al. · Science · 442
EFI-EST, EFI-GNT, and EFI-CGFP: Enzyme Function Initiative (EFI) Web Resource for Genomic Enzymology Tools
2023 · Nils Oberg, Rémi Zallot, et al. · Journal of Molecular Biology · 413
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Deep learning enables high-quality and high-throughput prediction of enzyme commission numbers
2019 · Jae Yong Ryu, Hyun Uk Kim, et al. · Proceedings of the National Academy of Sciences · 293
DEEPre: sequence-based enzyme EC number prediction by deep learning
2017 · Yu Li, Sheng Wang, et al. · Bioinformatics · 291
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Microbial genome analysis: the COG approach
2017 · Michael Y Galperin, David M Kristensen, et al. · Briefings in Bioinformatics · 287
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EzyPred: A top–down approach for predicting enzyme functional classes and subclasses
2007 · Hong-Bin Shen, Kuo-Chen Chou · Biochemical and Biophysical Research Communications · 269
Current peptidomics: Applications, purification, identification, quantification, and functional analysis
2014 · David C. Dallas, Andres Guerrero, et al. · PROTEOMICS · 247
Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space
2019 · William Helbert, Laurent Poulet, et al. · Proceedings of the National Academy of Sciences · 228
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BioTransformer 3.0—a web server for accurately predicting metabolic transformation products
2022 · David S Wishart, Siyang Tian, et al. · Nucleic Acids Research · 224
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Understanding nature's catalytic toolkit
2005 · Alex Gutteridge, Janet M. Thornton · Trends in Biochemical Sciences · 220
A novel ACO–GA hybrid algorithm for feature selection in protein function prediction
2009 · Shahla Nemati, Mohammad Ehsan Basiri, et al. · Expert Systems with Applications · 201
A roadmap for metagenomic enzyme discovery
2021 · Serina L. Robinson, Jörn Piel, et al. · Natural Product Reports · 184
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The Enzyme Function Initiative
2011 · John A. Gerlt, Karen N. Allen, et al. · Biochemistry · 183
Type III Polyketide Synthases: Functional Classification and Phylogenomics
2016 · Yugo Shimizu, Hiroyuki Ogata, et al. · ChemBioChem · 142
Computational identification of novel biochemical systems involved in oxidation, glycosylation and other complex modifications of bases in DNA
2013 · Lakshminarayan M. Iyer, Dapeng Zhang, et al. · Nucleic Acids Research · 134
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The fukutin protein family – predicted enzymes modifying cell-surface molecules
1999 · L. Aravind, Eugene V. Koonin · Current Biology · 133
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Systematic discovery of analogous enzymes in thiamin biosynthesis
2003 · Enrique Morett, Jan O Korbel, et al. · Nature Biotechnology · 127
RadicalSAM.org: A Resource to Interpret Sequence-Function Space and Discover New Radical SAM Enzyme Chemistry
2021 · Nils Oberg, Timothy W. Precord, et al. · ACS Bio & Med Chem Au · 124
‘Democratized’ genomic enzymology web tools for functional assignment
2018 · Rémi Zallot, Nils O Oberg, et al. · Current Opinion in Chemical Biology · 121
mlDEEPre: Multi-Functional Enzyme Function Prediction With Hierarchical Multi-Label Deep Learning
2019 · Zhenzhen Zou, Shuye Tian, et al. · Frontiers in Genetics · 120
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EFICAz: a comprehensive approach for accurate genome-scale enzyme function inference
2004 · Weidong Tian, Adrian K. Arakaki, et al. · Nucleic Acids Research · 106
Works count: 763
Citation count: 13,760
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