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Keyword

ESM-2

Description: A protein language model that analyzes amino acid sequences and produces representations used in tasks such as protein classification and prediction.
OpenAlex ID: keywords/esm-2
ToxinPred 3.0: An improved method for predicting the toxicity of peptides
2024 · Anand Singh Rathore, Shubham Choudhury, et al. · Computers in Biology and Medicine · 326
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Fine-tuning protein language models boosts predictions across diverse tasks
2024 · Robert Schmirler, Michael Heinzinger, et al. · Nature Communications · 228
Entire Space Multi-Task Modeling via Post-Click Behavior Decomposition for Conversion Rate Prediction
2020 · Hong Wen, Jing Zhang, et al. · International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR) · 140
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Protein language models learn evolutionary statistics of interacting sequence motifs
2024 · Zhidian Zhang, Hannah K. Wayment-Steele, et al. · Proceedings of the National Academy of Sciences · 139
Integrating protein language models and automatic biofoundry for enhanced protein evolution
2025 · Qiang Zhang, Wanyi Chen, et al. · Nature Communications · 95
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Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model
2023 · Yuansong Zeng, Zhuoyi Wei, et al. · Bioinformatics · 73
Predicting Antimicrobial Peptides Using ESMFold-Predicted Structures and ESM-2-Based Amino Acid Features with Graph Deep Learning
2024 · Greneter Cordoves-Delgado, César R. García-Jacas · Journal of Chemical Information and Modeling · 66
Interpretable feature extraction and dimensionality reduction in ESM2 for protein localization prediction
2023 · Zeyu Luo, Rui Wang, et al. · Briefings in Bioinformatics · 50
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AI-Driven Enzyme Engineering: Emerging Models and Next-Generation Biotechnological Applications
2025 · Mohd Faheem Khan, Mohd Tasleem Khan · Molecules · 46
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S‐PLM: Structure‐Aware Protein Language Model via Contrastive Learning Between Sequence and Structure
2024 · Duolin Wang, Mahdi Pourmirzaei, et al. · Advanced Science · 46
A protein language model for exploring viral fitness landscapes
2025 · Jumpei Ito, Adam Strange, et al. · Nature Communications · 44
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PocketDTA: an advanced multimodal architecture for enhanced prediction of drug−target affinity from 3D structural data of target binding pockets
2024 · Long Zhao, Hongmei Wang, et al. · Bioinformatics · 40
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DepoScope: Accurate phage depolymerase annotation and domain delineation using large language models
2024 · Robby Concha-Eloko, Michiel Stock, et al. · PLoS Computational Biology · 40
Alignment-free estimation of sequence conservation for identifying functional sites using protein sequence embeddings
2023 · Wayland Yeung, Zhongliang Zhou, et al. · Briefings in Bioinformatics · 35
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Improving protein-protein interaction prediction using protein language model and protein network features
2024 · Jun Hu, Zhe Li, et al. · Analytical Biochemistry · 34
THPLM: a sequence-based deep learning framework for protein stability changes prediction upon point variations using pretrained protein language model
2023 · Jianting Gong, Lili Jiang, et al. · Bioinformatics · 34
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Sparse autoencoders uncover biologically interpretable features in protein language model representations
2025 · Onkar Gujral, Mihir Bafna, et al. · Proceedings of the National Academy of Sciences · 33
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Parameter-efficient fine-tuning on large protein language models improves signal peptide prediction
2024 · Shuai Zeng, Duolin Wang, et al. · Genome Research · 33
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FusPB-ESM2: Fusion model of ProtBERT and ESM-2 for cell-penetrating peptide prediction
2024 · Fan Zhang, Jinfeng Li, et al. · Computational Biology and Chemistry · 33
VISH-Pred: an ensemble of fine-tuned ESM models for protein toxicity prediction
2024 · Raghvendra Mall, Ankita Singh, et al. · Briefings in Bioinformatics · 31
Multimodal pretraining for unsupervised protein representation learning
2024 · Viet Thanh Duy Nguyen, Truong Son Hy · Biology Methods and Protocols · 31
deep-AMPpred: A Deep Learning Method for Identifying Antimicrobial Peptides and Their Functional Activities
2025 · Jun Zhao, Hangcheng Liu, et al. · Journal of Chemical Information and Modeling · 30
PLMACPred prediction of anticancer peptides based on protein language model and wavelet denoising transformation
2024 · Muhammad Arif, Saleh Musleh, et al. · Scientific Reports · 29
Protein embedding based alignment
2024 · Benjamin Giovanni Iovino, Yuzhen Ye · BMC Bioinformatics · 29
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PEL-PVP: Application of plant vacuolar protein discriminator based on PEFT ESM-2 and bilayer LSTM in an unbalanced dataset
2024 · Cuilin Xiao, Zheyu Zhou, et al. · International Journal of Biological Macromolecules · 28
Works count: 777
Citation count: 3,146
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