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Keyword

evolutionary information

Description: Evolutionary information is evidence of sequence conservation and variation across related organisms, used in computational analyses of proteins and RNA.
OpenAlex ID: keywords/evolutionary-information
Evolutionary-scale prediction of atomic-level protein structure with a language model
2023 · Zeming Lin, Halil Akin, et al. · Science · 5,520
Prediction of Protein Secondary Structure at Better than 70% Accuracy
1993 · Burkhard Rost, Chris Sander · Journal of Molecular Biology · 2,910
[31] PHD: Predicting one-dimensional protein structure by profile-based neural networks
1996 · Burkhard Rost · Methods in enzymology on CD-ROM/Methods in enzymology · 1,275
Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization
2010 · Kuo-Chen Chou, Hong-Bin Shen · PLoS ONE · 1,159
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Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information
2006 · E. Capriotti, R. Calabrese, et al. · Bioinformatics · 944
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Functional annotations improve the predictive score of human disease-related mutations in proteins
2009 · Remo Calabrese, Emidio Capriotti, et al. · Human Mutation · 692
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Transmembrane helices predicted at 95% accuracy
1995 · Burkhard Rost, Chris Sander, et al. · Protein Science · 664
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Better prediction of functional effects for sequence variants
2015 · Maximilian Hecht, Yana Bromberg, et al. · BMC Genomics · 608
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Exploiting the past and the future in protein secondary structure prediction
1999 · Pierre Baldi, Søren Brunak, et al. · Bioinformatics · 497
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Improving the accuracy of transmembrane protein topology prediction using evolutionary information
2007 · David T. Jones · Bioinformatics · 419
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A New Method for Predicting the Subcellular Localization of Eukaryotic Proteins with Both Single and Multiple Sites: Euk-mPLoc 2.0
2010 · Kuo-Chen Chou, Hong-Bin Shen · PLoS ONE · 395
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Predicting protein–protein interactions through sequence-based deep learning
2018 · Somaye Hashemifar, Behnam Neyshabur, et al. · Bioinformatics · 368
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mCSM-PPI2: predicting the effects of mutations on protein–protein interactions
2019 · Carlos H M Rodrigues, Yoochan Myung, et al. · Nucleic Acids Research · 364
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A Family of Evolution–Entropy Hybrid Methods for Ranking Protein Residues by Importance
2004 · I. Mihalek, I. Reš, et al. · Journal of Molecular Biology · 294
Prediction of RNA binding sites in a protein using SVM and PSSM profile
2007 · Manish Kumar, M. Michael Gromiha, et al. · Proteins Structure Function and Bioinformatics · 282
PSSM-based prediction of DNA binding sites in proteins
2005 · Shandar Ahmad, Akinori Sarai · BMC Bioinformatics · 272
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Best α‐helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information
2004 · Håkan Viklund, Arne Elofsson · Protein Science · 261
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ISIS: interaction sites identified from sequence
2007 · Yanay Ofran, Burkhard Rost · Bioinformatics · 258
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Prediction of coordination number and relative solvent accessibility in proteins
2002 · Gianluca Pollastri, Pierre Baldi, et al. · Proteins Structure Function and Bioinformatics · 249
PROMALS3D: Multiple Protein Sequence Alignment Enhanced with Evolutionary and Three-Dimensional Structural Information
2013 · Jimin Pei, Nick V. Grishin · Methods in molecular biology · 240
sAMPpred-GAT: prediction of antimicrobial peptide by graph attention network and predicted peptide structure
2022 · Ke Yan, Hongwu Lv, et al. · Bioinformatics · 233
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PredictProtein - Predicting Protein Structure and Function for 29 Years
2021 · Michael Bernhofer, Christian Dallago, et al. · Nucleic Acids Research · 233
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Predicting drug-target interactions using Lasso with random forest based on evolutionary information and chemical structure
2018 · Han Shi, Simin Liu, et al. · Genomics · 227
Modeling protein–protein and protein–peptide complexes: CAPRI 6th edition
2016 · Marc F. Lensink, Sameer Velankar, et al. · Proteins Structure Function and Bioinformatics · 222
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Large-scale determination of previously unsolved protein structures using evolutionary information
2015 · Sergey Ovchinnikov, Lisa Kinch, et al. · eLife · 222
Works count: 686
Citation count: 33,190
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