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Keyword

gene expression quantification

Description: Measurement or estimation of the abundance of gene transcripts in biological samples, using methods such as RNA sequencing, microarrays, or PCR.
OpenAlex ID: keywords/gene-expression-quantification
TopHat: discovering splice junctions with RNA-Seq
2009 · Cole Trapnell, Lior Pachter, et al. · Bioinformatics · 11,620
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Relative expression software tool (REST(C)) for group-wise comparison and statistical analysis of relative expression results in real-time PCR
2002 · M. W. Pfaffl · Nucleic Acids Research · 7,377
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Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
2016 · Mihaela Pertea, Daehwan Kim, et al. · Nature Protocols · 6,854
Full-length RNA-seq from single cells using Smart-seq2
2014 · Simone Picelli, Omid R Faridani, et al. · Nature Protocols · 4,126
Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays
2000 · SA Bustin · Journal of Molecular Endocrinology · 3,873
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Correlation between Protein and mRNA Abundance in Yeast
1999 · Steven P. Gygi, Yvan Rochon, et al. · Molecular and Cellular Biology · 3,816
Serial Analysis of Gene Expression
1995 · Victor E. Velculescu, Lin Zhang, et al. · Science · 3,727
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
2002 · Y. H. Yang · Nucleic Acids Research · 3,465
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The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
2019 · Yang Liao, Gordon K Smyth, et al. · Nucleic Acids Research · 2,944
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A survey of best practices for RNA-seq data analysis
2016 · Ana Conesa, Pedro Madrigal, et al. · Genome biology · 2,773
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Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples
2012 · Günter P. Wagner, Koryu Kin, et al. · Theory in Biosciences · 2,138
Real-Time PCR for mRNA Quantitation
2005 · Marisa L. Wong, Juan F. Medrano · BioTechniques · 1,793
Mapping RNA‐seq Reads with STAR
2015 · Alexander Dobin, Thomas R. Gingeras · Current Protocols in Bioinformatics · 1,305
Computational methods for transcriptome annotation and quantification using RNA-seq
2011 · Manuel Garber, Manfred G Grabherr, et al. · Nature Methods · 1,041
A standard curve based method for relative real time PCR data processing
2005 · Alexey Larionov, Andreas Krause, et al. · BMC Bioinformatics · 949
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Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology
2008 · Cindy J. Smith, A. Mark Osborn · FEMS Microbiology Ecology · 937
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Single-Cell RNA-Seq Technologies and Related Computational Data Analysis
2019 · Geng Chen, Baitang Ning, et al. · Frontiers in Genetics · 924
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RNA Sequencing and Analysis
2015 · Kimberly R. Kukurba, Stephen B. Montgomery · Cold Spring Harbor Protocols · 921
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PrimerBank: a resource of human and mouse PCR primer pairs for gene expression detection and quantification
2009 · Athanasia Spandidos, Xiaowei Wang, et al. · Nucleic Acids Research · 910
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Ballgown bridges the gap between transcriptome assembly and expression analysis
2015 · Alyssa C Frazee, Geo Pertea, et al. · Nature Biotechnology · 867
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Quantitative real-time RT-PCR data analysis: current concepts and the novel “gene expression’s C T difference” formula
2006 · Jan H. Schefe, Kerstin E. Lehmann, et al. · Journal of Molecular Medicine · 859
Multiplexed quantification of proteins and transcripts in single cells
2017 · Vanessa M Peterson, Kelvin Xi Zhang, et al. · Nature Biotechnology · 829
A practical approach to RT-qPCR—Publishing data that conform to the MIQE guidelines
2010 · Sean Taylor, Michael Wakem, et al. · Methods · 777
A novel rapid assay for chloramphenicol acetyltransferase gene expression
1987 · Jürgen Neumann, C.A. Morency, et al. · BioTechniques · 762
Secreted placental alkaline phosphatase: a powerful new quantitative indicator of gene expression in eukaryotic cells
1988 · Joel Berger, Joachim Hauber, et al. · Gene · 668
Works count: 4,027
Citation count: 129,600
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