Keyword

gene modules

Description: Groups of genes whose expression patterns or network relationships are analyzed together to identify shared biological functions or regulation.

Primary topic: Bioinformatics and Genomic Networks (22%)

Wikidata ID: wiki/Q104852675

OpenAlex ID: keywords/gene-modules

A General Framework for Weighted Gene Co-Expression Network Analysis

2005 · Bin Zhang, Steve Horvath · Statistical Applications in Genetics and Molecular Biology · 5,668

Genevestigator V3: A Reference Expression Database for the Meta‐Analysis of Transcriptomes

2008 · Tomas Hruz, Oliver Laule, et al. · Advances in Bioinformatics · 1,910

PDF

The second wave of synthetic biology: from modules to systems

2009 · Priscilla E. M. Purnick, Ron Weiss · Nature Reviews Molecular Cell Biology · 1,179

Human haematopoietic stem cell lineage commitment is a continuous process

2017 · Lars Velten, Simon F. Haas, et al. · Nature Cell Biology · 924

Modular Organization of Genes Required for Complex Polyketide Biosynthesis

1991 · Stefano Donadio, Michael J. Staver, et al. · Science · 899

A choice of death - the signal-transduction of immune-mediated beta-cell apoptosis

2001 · D. L. Eizirik, T. Mandrup-Poulsen · Diabetologia · 890

PDF

An integrated cell atlas of the lung in health and disease

2023 · Lisa Sikkema, Ciro Ramírez-Suástegui, et al. · Nature Medicine · 868

PDF

A module map showing conditional activity of expression modules in cancer

2004 · Eran Segal, Nir Friedman, et al. · Nature Genetics · 686

PDF

A text-mining analysis of the human phenome

2006 · Marc A van Driel, Jorn Bruggeman, et al. · European Journal of Human Genetics · 664

PDF

Network propagation: a universal amplifier of genetic associations

2017 · Lenore Cowen, Trey Ideker, et al. · Nature Reviews Genetics · 661

Computational discovery of gene modules and regulatory networks

2003 · Ziv Bar-Joseph, Georg K Gerber, et al. · Nature Biotechnology · 606

GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics

2012 · D. Tabas-Madrid, R. Nogales-Cadenas, et al. · Nucleic Acids Research · 536

Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment

2022 · Dalia Barkley, Reuben Moncada, et al. · Nature Genetics · 527

The Intestinal Wnt/TCF Signature

2006 · Laurens G. Van der Flier, Jacob Sabates–Bellver, et al. · Gastroenterology · 513

Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism

2014 · Simone Gupta, Shannon E. Ellis, et al. · Nature Communications · 504

PDF

Complete Sequence of the Citrus Tristeza Virus RNA Genome

1995 · A.V. Karasev, V.P. Boyko, et al. · Virology · 480

Integrating Genetic and Network Analysis to Characterize Genes Related to Mouse Weight

2006 · Anatole Ghazalpour, Sudheer Doss, et al. · PLoS Genetics · 462

PDF

Comparison of co-expression measures: mutual information, correlation, and model based indices

2012 · Lin Song, Peter Langfelder, et al. · BMC Bioinformatics · 460

Systematic humanization of yeast genes reveals conserved functions and genetic modularity

2015 · Aashiq H. Kachroo, Jon M. Laurent, et al. · Science · 432

Integrating ‘omic’ information: a bridge between genomics and systems biology

2003 · Hui Ge, Albertha J.M Walhout, et al. · Trends in Genetics · 431

A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells

2016 · Meromit Singer, Chao Wang, et al. · Cell · 424

PDF

Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types

2014 · Yang Yang, Leng Han, et al. · Nature Communications · 423

PDF

Modular Transcriptional Repertoire Analyses of Adults With Systemic Lupus Erythematosus Reveal Distinct Type I and Type II Interferon Signatures

2014 · Laurent Chiche, Noémie Jourde‐Chiche, et al. · Arthritis & Rheumatology · 421

Exopolysaccharides of lactic acid bacteria: Structure, bioactivity and associations: A review

2018 · Yang Zhou, Yanhua Cui, et al. · Carbohydrate Polymers · 413

Gene expression patterns unveil a new level of molecular heterogeneity in colorectal cancer

2013 · Eva Budinska, Vlad Popovici, et al. · The Journal of Pathology · 409

PDF

Works count: 2,506

Citation count: 50,780