Keyword

genomic data processing

Description: Computational operations that prepare, transform, or analyze genomic data for subsequent research or biomedical applications.

Primary topic: Scientific Computing and Data Management (35%)

OpenAlex ID: keywords/genomic-data-processing

Whole genome sequencing in clinical practice

2024 · Frederik Otzen Bagger, Line Borgwardt, et al. · BMC Medical Genomics · 180

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SEAL: a distributed short read mapping and duplicate removal tool

2011 · Luca Pireddu, Simone Leo, et al. · Bioinformatics · 135

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Bioinformatics applications on Apache Spark

2018 · Runxin Guo, Yi Zhao, et al. · GigaScience · 96

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Experiences building Globus Genomics: a next‐generation sequencing analysis service using Galaxy, Globus, and Amazon Web Services

2014 · Ravi K. Madduri, Dinanath Sulakhe, et al. · Concurrency and Computation Practice and Experience · 73

snpR: User friendly population genomics for SNP data sets with categorical metadata

2022 · William Hemstrom, Melissa Jones · Molecular Ecology Resources · 61

GenCache

2019 · Anirban Nag, C. N. Ramachandra, et al. · Proceedings of the ... annual International Symposium on Microarchitecture/Proceedings of the annual International Symposium on Microarchitecture · 51

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When the levee breaks: a practical guide to sketching algorithms for processing the flood of genomic data

2019 · Will P. M. Rowe · Genome biology · 47

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K-Mer Counting Using Bloom Filters with an FPGA-Attached HMC

2017 · Nathaniel Mcvicar, Chih-Ching Lin, et al. · IEEE International Symposium on Field-Programmable Custom Computing Machines (FCCM) · 35

Considerations when processing and interpreting genomics data of the placenta

2019 · Chaini Konwar, Giulia Del Gobbo, et al. · Placenta · 33

Parallel computing in genomic research: advances and applications

2015 · Daniel de Oliveira, Kary Ocaña · Advances and Applications in Bioinformatics and Chemistry · 33

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Data Algorithms: Recipes for Scaling Up with Hadoop and Spark

2015 · Mahmoud Parsian · CERN Document Server (European Organization for Nuclear Research) · 33

Variant Calling Parallelization on Processor-in-Memory Architecture

2020 · Dominique Lavenier, Remy Cimadomo, et al. · IEEE International Conference on Bioinformatics and Biomedicine (BIBM) · 29

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Application of K-means clustering based on artificial intelligence in gene statistics of biological information engineering

2024 · Zheng He, Xinyu Shen, et al. · International Conference on Bioinformatics and Intelligent Computing (BIC) · 28

SparkBLAST: scalable BLAST processing using in-memory operations

2017 · Marcelo Rodrigo de Castro, Catherine dos Santos Tostes, et al. · BMC Bioinformatics · 28

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Closha: bioinformatics workflow system for the analysis of massive sequencing data

2018 · GunHwan Ko, Pan-Gyu Kim, et al. · BMC Bioinformatics · 27

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snpReady: Preparing Genotypic Datasets in Order to Run Genomic Analysis

2017 · Italo Granato, Roberto Fritsche-Neto · 26

The genome atlas: navigating a new era of reference genomes

2021 · Alice M. Kaye, Wyeth W. Wasserman · Trends in Genetics · 25

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Bioinformatics Workflow for Clinical Whole Genome Sequencing at Partners HealthCare Personalized Medicine

2016 · Ellen Tsai, Rimma Shakbatyan, et al. · Journal of Personalized Medicine · 25

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WHAM

2012 · Yinan Li, Jignesh M. Patel, et al. · ACM Transactions on Database Systems · 24

COSMOS: Python library for massively parallel workflows

2014 · Erik Gafni, Lovelace J. Luquette, et al. · Bioinformatics · 23

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SARVAVID

2016 · Kanak Mahadik, Christopher Wright, et al. · International Conference on Supercomputing · 21

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Optimization of SAMtools sorting using OpenMP tasks

2017 · Nathan T. Weeks, Glenn R. Luecke · Cluster Computing · 18

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Statistical Issues in the Analysis of ChIP-Seq and RNA-Seq Data

2010 · Debashis Ghosh, Zhaohui S. Qin · Genes · 18

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Experiences in building a next-generation sequencing analysis service using galaxy, globus online and Amazon web service

2013 · Ravi K. Madduri, Paul Dave, et al. · 17

ExSep: An exon separation process using Neural Skyline Filter

2016 · Md. Sarwar Kamal, Sonia Farhana Nimmy, et al. · International Conference on Electrical, Electronics, and Optimization Techniques · 15

Works count: 712

Citation count: 1,596