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Keyword

gVCF

Description: A genomic variant call format file that records called variants and reference-confidence information for genomic sequencing analysis.
OpenAlex ID: keywords/gvcf
The GATK joint genotyping workflow is appropriate for calling variants in RNA-seq experiments
2019 · Jean-Simon Brouard, Flavio Schenkel, et al. · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · 159
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xAtlas: scalable small variant calling across heterogeneous next-generation sequencing experiments
2022 · Jesse Farek, Daniel Hughes, et al. · GigaScience · 32
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CHARR efficiently estimates contamination from DNA sequencing data
2023 · Wenhan Lu, Laura D. Gauthier, et al. · The American Journal of Human Genetics · 13
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Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR
2022 · Sebastian Beier, Anne Fiebig, et al. · F1000Research · 10
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trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios
2021 · Dustin B. Miller, Stephen R. Piccolo · BMC Bioinformatics · 8
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A negative storage model for precise but compact storage of genetic variation data
2020 · Guillermo Gonzalez-Calderon, Ruizheng Liu, et al. · Database · 6
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Ultra-fast joint-genotyping with SparkGOR
2022 · Hákon Guðbjartsson, Hjalti Þór Ísleifsson, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2
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Sniffles2 methods v1
2023 · Moritz Smolka, Luis F Paulin, et al. · 1
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CNP0001986 gVCFs part 1
2022 · Parejo, Melanie, Talenti, Andrea, et al. · Edinburgh Research Explorer (University of Edinburgh) · 1
CNP0001986 gVCFs part 2
2022 · Parejo, Melanie, Talenti, Andrea, et al. · Edinburgh Research Explorer (University of Edinburgh) · 1
PRJNA311274 gVCFs part 2
2022 · Parejo, Melanie, Talenti, Andrea, et al. · Edinburgh Research Explorer (University of Edinburgh) · 1
PRJNA311274 gVCFs part 1
2022 · Parejo, Melanie, Talenti, Andrea, et al. · Edinburgh Research Explorer (University of Edinburgh) · 1
PRJNA363032 gVCFs
2022 · Parejo, Melanie, Talenti, Andrea, et al. · Edinburgh Research Explorer (University of Edinburgh) · 1
PRJNA516678 gVCFs
2022 · Parejo, Melanie, Talenti, Andrea, et al. · Edinburgh Research Explorer (University of Edinburgh) · 1
PRJEB16533 gVCFs
2022 · Parejo, Melanie, Talenti, Andrea, et al. · Edinburgh Research Explorer (University of Edinburgh) · 1
PRJEB39369 gVCFs
2022 · Parejo, Melanie, Talenti, Andrea, et al. · Edinburgh Research Explorer (University of Edinburgh) · 1
PRJNA578233 gVCFs
2022 · Parejo, Melanie, Talenti, Andrea, et al. · Edinburgh Research Explorer (University of Edinburgh) · 1
PRJNA596071 gVCFs
2022 · Parejo, Melanie, Talenti, Andrea, et al. · Edinburgh Research Explorer (University of Edinburgh) · 1
gVCFCreator
2026 · Spartano, Serena · Zenodo (CERN European Organization for Nuclear Research)
cosegvcf
2026 · Spartano, Serena · Zenodo (CERN European Organization for Nuclear Research)
github.com/iwc-workflows/giraffe-deep-variant-pangenome-calling/main
2026 · Niklas Mayle, Saim Momin · Zenodo (CERN European Organization for Nuclear Research)
gVCF2CNV: a scalable pipeline for CNV detection from whole-genome sequencing data
2026 · Mame Seynabou Diop, Florian Bénitière, et al. · bioRxiv (Cold Spring Harbor Laboratory)
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Variant calling for non-model organisms: trimming, alignment, per-sample gVCFs, joint genotyping, callable sites, postprocessing and QC dashboard
2026 · Wang, Shixiang · WorkflowHub
Benchmarking sequence performance on the DNBSEQ-T7 using Ashkenazi Trio Genome in a Bottle reference genomes - gVCFs
2026 · South African Medical Research Council Genomics Platform · Zenodo (CERN European Organization for Nuclear Research)
github.com/broadinstitute/long-read-pipelines/SRJointCallGVCFsWithGenomicsDBPopulationScale
2026 · Jonn Smith · Zenodo (CERN European Organization for Nuclear Research)
Works count: 2,618
Citation count: 246
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