Keyword

microarray normalization

Description: Statistical adjustment of microarray measurements to reduce technical variation and make expression values comparable across probes or samples.

Primary topic: Gene expression and cancer classification (84%)

OpenAlex ID: keywords/microarray-normalization

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

2003 · B.M. Bolstad, R.A Irizarry, et al. · Bioinformatics · 8,267

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Microarray data normalization and transformation

2002 · John Quackenbush · Nature Genetics · 1,973

Analysis of Variance for Gene Expression Microarray Data

2000 · M. Kathleen Kerr, Mitchell Martin, et al. · Journal of Computational Biology · 1,310

limmaGUI: A graphical user interface for linear modeling of microarray data

2004 · James M. Wettenhall, Gordon K. Smyth · Bioinformatics · 722

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Removing Batch Effects in Analysis of Expression Microarray Data: An Evaluation of Six Batch Adjustment Methods

2011 · Chao Chen, Kay Grennan, et al. · PLoS ONE · 542

Normalization for cDNA microarry data

2001 · Yee H. Yang, Sandrine Dudoit, et al. · Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE · 442

Using control genes to correct for unwanted variation in microarray data

2011 · J. A. Gagnon-Bartsch, T. P. Speed · Biostatistics · 441

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High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay

2008 · Lars Dölken, Zsolt Ruzsics, et al. · RNA · 407

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Modeling Oncogenic Signaling in Colon Tumors by Multidirectional Analyses of Microarray Data Directed for Maximization of Analytical Reliability

2010 · Magdalena Skrzypczak, Krzysztof Goryca, et al. · PLoS ONE · 395

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Control Genes and Variability: Absence of Ubiquitous Reference Transcripts in Diverse Mammalian Expression Studies

2002 · Peter D. Lee, Robert Sladek, et al. · Genome Research · 369

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Selection of DDX5 as a novel internal control for Q-RT-PCR from microarray data using a block bootstrap re-sampling scheme

2007 · Li-Jen Su, Ching-Wei Chang, et al. · BMC Genomics · 340

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Evaluating different methods of microarray data normalization

2006 · André Fujita, João Ricardo Sato, et al. · BMC Bioinformatics · 261

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Expander: from expression microarrays to networks and functions

2010 · Igor Ulitsky, Adi Maron-Katz, et al. · Nature Protocols · 194

Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks

2007 · Wei Keat Lim, Kai Wang, et al. · Bioinformatics · 190

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Statistics for Microarrays

2004 · Ernst Wit, John McClure · Wiley eBooks · 187

Gene Expression Profile Analysis by DNA Microarrays

2001 · Hadley C. King, Animesh A. Sinha · JAMA · 187

Parameter estimation for the calibration and variance stabilization of microarray data

2003 · Wolfgang Huber, Anja von Heydebreck, et al. · Statistical Applications in Genetics and Molecular Biology · 185

Monitoring global messenger RNA changes in externally controlled microarray experiments

2003 · Jeroen van de Peppel, Patrick Kemmeren, et al. · EMBO Reports · 177

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Evaluation of normalization methods for microarray data

2003 · Taesung Park, Sung-Gon Yi, et al. · BMC Bioinformatics · 175

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The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets – improving meta-analysis and prediction of prognosis

2008 · Andrew H Sims, Graeme J Smethurst, et al. · BMC Medical Genomics · 159

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SNOMAD (Standardization and NOrmalization of MicroArray Data): web-accessible gene expression data analysis

2002 · Carlo Colantuoni, George Henry, et al. · Bioinformatics · 154

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Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system

2012 · Ramiro Vilchez‐Vargas, Robert Geffers, et al. · Environmental Microbiology · 145

A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis

2013 · Sarah E. Reese, Kellie J. Archer, et al. · Bioinformatics · 143

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Normalization for two-color cDNA microarray data

2003 · Yee Hwa Yang, Natalie P. Thorne · Lecture notes-monograph series · 135

Supervised normalization of microarrays

2010 · Brigham H. Mecham, Peter S. Nelson, et al. · Bioinformatics · 130

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Works count: 707

Citation count: 25,110