Keyword

mRNA-seq

Description: A sequencing method for measuring messenger RNA molecules, used to study gene expression and other aspects of transcriptomes.

Primary topic: Gene expression and cancer classification (62%)

Wikidata ID: wiki/Q2542347

OpenAlex ID: keywords/mrna-seq

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

2008 · Qun Pan, Ofer Shai, et al. · Nature Genetics · 3,941

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

2010 · James H Bullard, Elizabeth Purdom, et al. · BMC Bioinformatics · 1,680

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B Cells and T Follicular Helper Cells Mediate Response to Checkpoint Inhibitors in High Mutation Burden Mouse Models of Breast Cancer

2019 · Daniel P. Hollern, Nuo Xu, et al. · Cell · 478

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Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling

2014 · Wei Zhao, Xiaping He, et al. · BMC Genomics · 321

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On the optimal trimming of high-throughput mRNA sequence data

2014 · Matthew D. MacManes · Frontiers in Genetics · 210

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De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq

2010 · Eshchar Mizrachi, Charles A Hefer, et al. · BMC Genomics · 166

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Analysis of next-generation genomic data in cancer: accomplishments and challenges

2010 · L. Ding, M. C. Wendl, et al. · Human Molecular Genetics · 144

OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds

2013 · Jie Wu, Olga Anczuków, et al. · Nucleic Acids Research · 123

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A Simple, Cost-Effective, and Robust Method for rRNA Depletion in RNA-Sequencing Studies

2020 · Peter H. Culviner, Chantal K. Guegler, et al. · mBio · 120

Multi-perspective quality control of Illumina RNA sequencing data analysis

2016 · Quanhu Sheng, Kasey Vickers, et al. · Briefings in Functional Genomics · 118

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RNA-Seq Assembly – Are We There Yet?

2012 · Simon Schliesky, Udo Gowik, et al. · Frontiers in Plant Science · 97

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Detection of Redundant Fusion Transcripts as Biomarkers or Disease-Specific Therapeutic Targets in Breast Cancer

2012 · Yan W. Asmann, Brian M. Necela, et al. · Cancer Research · 90

RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data

2016 · Audrey M. Michel, James P. A. Mullan, et al. · RNA Biology · 87

Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V’DJer

2016 · Lisle E. Mose, Sara R. Selitsky, et al. · Bioinformatics · 79

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Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus

2012 · Janet Higgins, Andreas Magusin, et al. · BMC Genomics · 75

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High-Throughput MicroRNA and mRNA Sequencing Reveals That MicroRNAs May Be Involved in Melatonin-Mediated Cold Tolerance in Citrullus lanatus L.

2016 · Hao Li, Yuchuan Dong, et al. · Frontiers in Plant Science · 68

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DNA methylome and transcriptome sequencing in human ovarian granulosa cells links age-related changes in gene expression to gene body methylation and 3ʹ-end GC density

2015 · Bo Yu, Valya R. Russanova, et al. · Oncotarget · 68

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wapRNA: a web-based application for the processing of RNA sequences

2011 · Wenming Zhao, Wanfei Liu, et al. · Bioinformatics · 68

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mRNA-seq whole transcriptome profiling of fresh frozen versus archived fixed tissues

2018 · Noa Bossel Ben-Moshe, Shlomit Gilad, et al. · BMC Genomics · 61

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Plant Omics Data Center: An Integrated Web Repository for Interspecies Gene Expression Networks with NLP-Based Curation

2014 · Hajime Ohyanagi, Tomoyuki Takano, et al. · Plant and Cell Physiology · 60

Genome-wide mRNA sequencing of a single canine cerebellar cortical degeneration case leads to the identification of a disease associated SPTBN2 mutation

2012 · Oliver P Forman, Luisa De Risio, et al. · BMC Genetics · 54

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Imprinted Genes … and the Number Is?

2012 · Gavin Kelsey, Marisa S. Bartolomei · PLoS Genetics · 49

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SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways

2014 · Juan Yu, Zhenhai Zhang, et al. · BMC Genomics · 48

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Differential Gene Expression in the Siphonophore Nanomia bijuga (Cnidaria) Assessed with Multiple Next-Generation Sequencing Workflows

2011 · Stefan Siebert, Mark D. Robinson, et al. · PLoS ONE · 45

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Comparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into the genome and MpkA dependent gene expression

2012 · Sebastian Müller, Clara Baldin, et al. · BMC Genomics · 42

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Works count: 1,164

Citation count: 8,994