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Keyword

multiple sequence alignment

Description: Multiple sequence alignment is a computational method for aligning three or more biological sequences to identify shared patterns and evolutionary relationships.
Wikidata ID: wiki/Q1377767
OpenAlex ID: keywords/multiple-sequence-alignment
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
2013 · K. Katoh, D. M. Standley · Molecular Biology and Evolution · 45,965
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
2004 · R. C. Edgar · Nucleic Acids Research · 44,586
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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
1997 · J. Thompson · Nucleic Acids Research · 39,007
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Clustal W and Clustal X version 2.0
2007 · M.A. Larkin, G. Blackshields, et al. · Bioinformatics · 28,367
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
2002 · K. Katoh · Nucleic Acids Research · 16,975
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Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
2011 · Fabian Sievers, Andreas Wilm, et al. · Molecular Systems Biology · 15,373
The Pfam Protein Families Database
2002 · A. Bateman · Nucleic Acids Research · 14,001
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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
2009 · Salvador Capella-Gutiérrez, José M. Silla-Martínez, et al. · Bioinformatics · 12,794
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WebLogo: A Sequence Logo Generator: Figure 1
2004 · Gavin E. Crooks, Gary Hon, et al. · Genome Research · 12,392
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Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
2000 · J. Castresana · Molecular Biology and Evolution · 10,527
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Jalview Version 2—a multiple sequence alignment editor and analysis workbench
2009 · Andrew M. Waterhouse, James B. Procter, et al. · Bioinformatics · 10,242
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MUSCLE: a multiple sequence alignment method with reduced time and space complexity
2004 · Robert C Edgar · BMC Bioinformatics · 8,974
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MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
2017 · Kazutaka Katoh, John Rozewicki, et al. · Briefings in Bioinformatics · 8,863
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Deciphering key features in protein structures with the new ENDscript server
2014 · Xavier Robert, Patrice Gouet · Nucleic Acids Research · 7,034
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T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. Thornton
2000 · Cédric Notredame, Desmond G Higgins, et al. · Journal of Molecular Biology · 6,852
Biopython: freely available Python tools for computational molecular biology and bioinformatics
2009 · Peter J. A. Cock, Tiago Antao, et al. · Bioinformatics · 6,035
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HMMER web server: interactive sequence similarity searching
2011 · R. D. Finn, J. Clements, et al. · Nucleic Acids Research · 5,934
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SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
2009 · M. Gouy, S. Guindon, et al. · Molecular Biology and Evolution · 5,786
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Profile hidden Markov models.
1998 · S R Eddy · Bioinformatics · 5,509
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Multiple sequence alignment with hierarchical clustering
1988 · F. Corpet · Nucleic Acids Research · 5,395
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
2004 · Aaron C.E. Darling, Bob Mau, et al. · Genome Research · 5,007
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Multiple sequence alignment with the Clustal series of programs
2003 · R. Chenna · Nucleic Acids Research · 4,875
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MAFFT version 5: improvement in accuracy of multiple sequence alignment
2005 · K. Katoh · Nucleic Acids Research · 4,839
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ggtree : an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data
2016 · Guangchuang Yu, David K. Smith, et al. · Methods in Ecology and Evolution · 4,835
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Phylogeny.fr: robust phylogenetic analysis for the non-specialist
2008 · A. Dereeper, V. Guignon, et al. · Nucleic Acids Research · 4,693
Works count: 9,495
Citation count: 689,100
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