Keyword

pathway analysis

Description: Pathway analysis is a bioinformatics approach that interprets molecular data by examining groups of genes or molecules within biological pathways.

Primary topic: Bioinformatics and Genomic Networks (38%)

Wikidata ID: wiki/Q25303877

OpenAlex ID: keywords/pathway-analysis

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

2005 · Aravind Subramanian, Pablo Tamayo, et al. · Proceedings of the National Academy of Sciences · 53,501

MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation

2024 · Zhiqiang Pang, Yao Lu, et al. · Nucleic Acids Research · 2,335

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Genetics of rheumatoid arthritis contributes to biology and drug discovery

2013 · Yukinori Okada, Di Wu, et al. · Nature · 2,309

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Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes

2012 · Australian Pancreatic Cancer Genome Initiative, Andrew V. Biankin, et al. · Nature · 2,057

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iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data

2018 · Steven Xijin Ge, Eun Wo Son, et al. · BMC Bioinformatics · 1,664

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Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges

2012 · Purvesh Khatri, Marina Sirota, et al. · PLoS Computational Biology · 1,570

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WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

2013 · Jing Wang, Dexter Duncan, et al. · Nucleic Acids Research · 1,498

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A new method to measure the semantic similarity of GO terms

2007 · James Z. Wang, Zhidian Du, et al. · Bioinformatics · 1,371

GAGE: generally applicable gene set enrichment for pathway analysis

2009 · Weijun Luo, Michael S Friedman, et al. · BMC Bioinformatics · 1,333

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From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline

2016 · Yunshun Chen, Aaron T. L. Lun, et al. · F1000Research · 1,301

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A systems biology approach for pathway level analysis

2007 · Sorin Draghici, Purvesh Khatri, et al. · Genome Research · 1,250

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Modulation of Genetic Associations with Serum Urate Levels by Body-Mass-Index in Humans

2015 · Jennifer E. Huffman, Eva Albrecht, et al. · PLoS ONE · 1,227

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A global test for groups of genes: testing association with a clinical outcome

2003 · Jelle J. Goeman, Sara A. van de Geer, et al. · Bioinformatics · 1,069

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Random forests for genomic data analysis

2012 · Xi Chen, Hemant Ishwaran · Genomics · 959

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GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways

2002 · Kam D. Dahlquist, Nathan Salomonis, et al. · Nature Genetics · 958

Camera: a competitive gene set test accounting for inter-gene correlation

2012 · Di Wu, Gordon K. Smyth · Nucleic Acids Research · 895

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Reactome pathway analysis: a high-performance in-memory approach

2017 · Antonio Fabregat, Konstantinos Sidiropoulos, et al. · BMC Bioinformatics · 877

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Pathway-Based Approaches for Analysis of Genomewide Association Studies

2007 · Kai Wang, Mingyao Li, et al. · The American Journal of Human Genetics · 858

edgeR v4: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets

2025 · Yunshun Chen, Lizhong Chen, et al. · Nucleic Acids Research · 838

The ConsensusPathDB interaction database: 2013 update

2012 · Atanas Kamburov, Ulrich Stelzl, et al. · Nucleic Acids Research · 808

A Versatile Gene-Based Test for Genome-wide Association Studies

2010 · Jimmy Z. Liu, Allan F. Mcrae, et al. · The American Journal of Human Genetics · 791

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Analysing biological pathways in genome-wide association studies

2010 · Kai Wang, Mingyao Li, et al. · Nature Reviews Genetics · 767

Gene–environment-wide association studies: emerging approaches

2010 · Duncan Thomas · Nature Reviews Genetics · 692

A human functional protein interaction network and its application to cancer data analysis

2010 · Guanming Wu, Xin Feng, et al. · Genome biology · 691

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Detection of gene pathways with predictive power for breast cancer prognosis

2010 · Shuangge Ma, Michael R Kosorok · BMC Bioinformatics · 690

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Works count: 6,874

Citation count: 162,200