Get started
Keyword

pathway databases

Description: Pathway databases are organized digital collections of biological pathway information used in bioinformatics and molecular research.
OpenAlex ID: keywords/pathway-databases
KEGG: Kyoto Encyclopedia of Genes and Genomes
1999 · H. Ogata, S. Goto, et al. · Nucleic Acids Research · 31,220
PDF
The KEGG resource for deciphering the genome
2003 · M. Kanehisa · Nucleic Acids Research · 5,115
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
2011 · Chen Xie, Xizeng Mao, et al. · Nucleic Acids Research · 5,103
PDF
Reactome: a database of reactions, pathways and biological processes
2010 · D. Croft, G. O'Kelly, et al. · Nucleic Acids Research · 1,748
PDF
iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
2018 · Steven Xijin Ge, Eun Wo Son, et al. · BMC Bioinformatics · 1,664
PDF
The KEGG databases at GenomeNet
2002 · M. Kanehisa · Nucleic Acids Research · 1,505
PDF
The KEGG Database
2002 · Minoru Kanehisa · Novartis Foundation symposium · 1,424
Pathway Commons, a web resource for biological pathway data
2010 · E. G. Cerami, B. E. Gross, et al. · Nucleic Acids Research · 1,098
PDF
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research
2017 · Denise N Slenter, Martina Kutmon, et al. · Nucleic Acids Research · 908
PDF
PANTHER Pathway: An Ontology-Based Pathway Database Coupled with Data Analysis Tools
2009 · Huaiyu Mi, Paul Thomas · Methods in molecular biology · 746
The BioPAX community standard for pathway data sharing
2010 · Emek Demir, Michael P Cary, et al. · Nature Biotechnology · 744
PDF
EcoCyc: a comprehensive database resource for Escherichia coli
2004 · I. M. Keseler · Nucleic Acids Research · 733
PDF
Prioritizing GWAS Results: A Review of Statistical Methods and Recommendations for Their Application
2010 · Rita M. Cantor, Kenneth Lange, et al. · The American Journal of Human Genetics · 621
PDF
NetPath: a public resource of curated signal transduction pathways
2010 · Kumaran Kandasamy, S Sujatha Mohan, et al. · Genome biology · 506
PDF
The MetaCyc Database
2002 · P. D. Karp · Nucleic Acids Research · 413
WebGestalt 2024: faster gene set analysis and new support for metabolomics and multi-omics
2024 · John M Elizarraras, Yuxing Liao, et al. · Nucleic Acids Research · 409
SMPDB: The Small Molecule Pathway Database
2009 · Alex Frolkis, Craig Knox, et al. · Nucleic Acids Research · 376
PDF
bioDBnet: the biological database network
2009 · Uma Mudunuri, Anney Che, et al. · Bioinformatics · 366
PathCards: multi-source consolidation of human biological pathways
2015 · Frida Belinky, Noam Nativ, et al. · Database · 284
Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information
2015 · Hong Yang, Chu Qin, et al. · Nucleic Acids Research · 271
PDF
Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics
2021 · Peter D. Karp, Peter E. Midford, et al. · BMC Genomics · 266
PDF
Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology
2015 · Peter D. Karp, Mario Latendresse, et al. · Briefings in Bioinformatics · 266
PDF
Pathway Mapping Tools for Analysis of High Content Data
2006 · Sean Ekins, Yuri Nikolsky, et al. · Humana Press eBooks · 263
Evaluation and comparison of bioinformatic tools for the enrichment analysis of metabolomics data
2018 · Anna Marco-Ramell, Magali Palau-Rodriguez, et al. · BMC Bioinformatics · 259
PDF
Pathway Databases: A Case Study in Computational Symbolic Theories
2001 · Peter D. Karp · Science · 230
Works count: 581
Citation count: 64,070
Year
Topic
Type