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Keyword

pathway visualization

Description: The graphical representation of biological pathways to support interpretation and analysis of molecular and omics data.
OpenAlex ID: keywords/pathway-visualization
ShinyGO: a graphical gene-set enrichment tool for animals and plants
2019 · Steven Xijin Ge, Dongmin Jung, et al. · Bioinformatics · 5,242
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The Reactome Pathway Knowledgebase
2017 · Antonio Fabregat, Steven Jupe, et al. · Nucleic Acids Research · 2,857
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Pathview: an R/Bioconductor package for pathway-based data integration and visualization
2013 · Weijun Luo, Cory Brouwer · Bioinformatics · 2,294
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Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap
2019 · Jüri Reimand, Ruth Isserlin, et al. · Nature Protocols · 1,964
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ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization
2015 · Guangchuang Yu, Qing-Yu He · Molecular BioSystems · 1,929
Reactome: a database of reactions, pathways and biological processes
2010 · D. Croft, G. O'Kelly, et al. · Nucleic Acids Research · 1,748
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PID: The Pathway Interaction Database
2008 · Carl Schaefer, Kira Anthony, et al. · Nature Precedings · 1,603
MetaboAnalyst 2.0--a comprehensive server for metabolomic data analysis
2012 · J. Xia, R. Mandal, et al. · Nucleic Acids Research · 1,150
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The BioCyc collection of microbial genomes and metabolic pathways
2017 · Peter D Karp, Richard Billington, et al. · Briefings in Bioinformatics · 998
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
2003 · Scott W Doniger, Nathan Salomonis, et al. · Genome biology · 865
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Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
2009 · P. D. Karp, S. M. Paley, et al. · Briefings in Bioinformatics · 694
SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database
2013 · Timothy Jewison, Yilu Su, et al. · Nucleic Acids Research · 475
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Pathview Web: user friendly pathway visualization and data integration
2017 · Weijun Luo, Gaurav Pant, et al. · Nucleic Acids Research · 438
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WikiPathways: capturing the full diversity of pathway knowledge
2015 · Martina Kutmon, Anders Riutta, et al. · Nucleic Acids Research · 418
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WebGestalt 2024: faster gene set analysis and new support for metabolomics and multi-omics
2024 · John M Elizarraras, Yuxing Liao, et al. · Nucleic Acids Research · 409
The Comparative Toxicogenomics Database's 10th year anniversary: update 2015
2014 · Allan Peter Davis, Cynthia J. Grondin, et al. · Nucleic Acids Research · 387
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SMPDB: The Small Molecule Pathway Database
2009 · Alex Frolkis, Craig Knox, et al. · Nucleic Acids Research · 376
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Pathway Commons 2019 Update: integration, analysis and exploration of pathway data
2019 · Igor Rodchenkov, Ozgun Babur, et al. · Nucleic Acids Research · 311
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The NCATS BioPlanet – An Integrated Platform for Exploring the Universe of Cellular Signaling Pathways for Toxicology, Systems Biology, and Chemical Genomics
2019 · Ruili Huang, Ivan Grishagin, et al. · Frontiers in Pharmacology · 294
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Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology
2019 · Peter D Karp, Peter E Midford, et al. · Briefings in Bioinformatics · 231
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Alignment of metabolic pathways
2005 · R. Y. Pinter, O. Rokhlenko, et al. · Computer applications in the biosciences · 214
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Reactome diagram viewer: data structures and strategies to boost performance
2017 · Antonio Fabregat, Konstantinos Sidiropoulos, et al. · Bioinformatics · 206
iPath: interactive exploration of biochemical pathways and networks
2008 · Ivica Letunic, Takuji Yamada, et al. · Trends in Biochemical Sciences · 202
Reactome enhanced pathway visualization
2017 · Konstantinos Sidiropoulos, Guilherme Viteri, et al. · Bioinformatics · 176
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The UCSC Cancer Genomics Browser: update 2013
2012 · Mary Goldman, Brian Craft, et al. · Nucleic Acids Research · 163
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Works count: 555
Citation count: 31,160
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