Keyword

phylogenomics

Description: Phylogenomics is the study of evolutionary relationships using genome-scale data and methods from phylogenetics and comparative genomics.

Primary topic: Genomics and Phylogenetic Studies (24%)

Wikidata ID: wiki/Q3381973

OpenAlex ID: keywords/phylogenomics

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

2016 · Sudhir Kumar, Glen Stecher, et al. · Molecular Biology and Evolution · 44,076

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MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

2018 · Sudhir Kumar, Glen Stecher, et al. · Molecular Biology and Evolution · 37,577

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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

2014 · Lam-Tung Nguyen, Heiko A. Schmidt, et al. · Molecular Biology and Evolution · 25,918

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jModelTest 2: more models, new heuristics and parallel computing

2012 · Diego Darriba, Guillermo L Taboada, et al. · Nature Methods · 16,791

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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

2020 · Bui Quang Minh, Heiko A Schmidt, et al. · Molecular Biology and Evolution · 16,689

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eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

2018 · Jaime Huerta-Cepas, Damian Szklarczyk, et al. · Nucleic Acids Research · 4,915

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The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions

2007 · Sabeeha S. Merchant, Simon E. Prochnik, et al. · Science · 2,691

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Ancestral polyploidy in seed plants and angiosperms

2011 · Yuannian Jiao, Norman J. Wickett, et al. · Nature · 2,232

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

2017 · Robert M Waterhouse, Mathieu Seppey, et al. · Molecular Biology and Evolution · 2,209

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MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics

2020 · Rémi Allio, Alex Schomaker-Bastos, et al. · Molecular Ecology Resources · 1,971

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Broad phylogenomic sampling improves resolution of the animal tree of life

2008 · Casey W. Dunn, Andreas Hejnol, et al. · Nature · 1,918

One thousand plant transcriptomes and the phylogenomics of green plants

2019 · One Thousand Plant Transcriptomes Initiative · Nature · 1,676

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Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

2009 · Brian J. Haas, Sophien Kamoun, et al. · Nature · 1,471

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Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny

2013 · Stephen L. Cameron · Annual Review of Entomology · 1,447

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Complex archaea that bridge the gap between prokaryotes and eukaryotes

2015 · Anja Spang, Jimmy H. Saw, et al. · Nature · 1,315

Phylogenomics and the reconstruction of the tree of life

2005 · Frédéric Delsuc, Henner Brinkmann, et al. · Nature Reviews Genetics · 1,237

Asgard archaea illuminate the origin of eukaryotic cellular complexity

2017 · Katarzyna Zaremba-Niedzwiedzka, Eva F. Caceres, et al. · Nature · 1,219

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

2015 · Annegret Kohler, Alan Kuo, et al. · Nature Genetics · 1,062

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Is a New and General Theory of Molecular Systematics Emerging?

2008 · Scott V. Edwards · Evolution · 1,058

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PHYLUCE is a software package for the analysis of conserved genomic loci

2015 · Brant C. Faircloth · Bioinformatics · 1,040

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Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

2010 · Jerome C. Regier, Jeffrey W. Shultz, et al. · Nature · 1,017

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

2009 · Dongying Wu, Philip Hugenholtz, et al. · Nature · 996

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Acinetobacter baumannii : evolution of a global pathogen

2013 · Luísa C.S. Antunes, Paolo Visca, et al. · Pathogens and Disease · 925

The timescale of early land plant evolution

2018 · Jennifer L. Morris, Mark N. Puttick, et al. · Proceedings of the National Academy of Sciences · 924

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dartr : An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing

2017 · Bernd Gruber, Peter J. Unmack, et al. · Molecular Ecology Resources · 920

Works count: 19,430

Citation count: 468,100