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Keyword

reference genome

Description: A representative assembled DNA sequence used as a standard for analyzing, comparing, and interpreting the genomes of organisms in genetics and genomics.
Wikidata ID: wiki/Q7307127
OpenAlex ID: keywords/reference-genome
Fast and accurate long-read alignment with Burrows–Wheeler transform
2010 · Heng Li, Richard Durbin · Bioinformatics · 12,031
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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
2013 · Morgan G I Langille, Jesse Zaneveld, et al. · Nature Biotechnology · 9,102
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Stacks: an analysis tool set for population genomics
2013 · Julian Catchen, Paul A. Hohenlohe, et al. · Molecular Ecology · 4,030
Towards complete and error-free genome assemblies of all vertebrate species
2021 · Arang Rhie, Shane A. McCarthy, et al. · Nature · 3,115
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Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences
2011 · Julian M Catchen, Angel Amores, et al. · G3 Genes Genomes Genetics · 1,935
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Nanopore sequencing and assembly of a human genome with ultra-long reads
2018 · Miten Jain, Sergey Koren, et al. · Nature Biotechnology · 1,890
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The genomic basis of adaptive evolution in threespine sticklebacks
2012 · Felicity C. Jones, Manfred G. Grabherr, et al. · Nature · 1,778
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Identification of Mutations in Laboratory-Evolved Microbes from Next-Generation Sequencing Data Using breseq
2014 · Daniel E. Deatherage, Jeffrey E. Barrick · Methods in molecular biology · 1,619
SIFT missense predictions for genomes
2015 · Robert Vaser, Swarnaseetha Adusumalli, et al. · Nature Protocols · 1,506
A chromosome conformation capture ordered sequence of the barley genome
2017 · Martin Mascher, Heidrun Gundlach, et al. · Nature · 1,446
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A unified catalog of 204,938 reference genomes from the human gut microbiome
2020 · Alexandre Almeida, Stephen Nayfach, et al. · Nature Biotechnology · 1,363
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Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
2013 · Mads Albertsen, Philip Hugenholtz, et al. · Nature Biotechnology · 1,251
Improved maize reference genome with single-molecule technologies
2017 · Yinping Jiao, Paul Peluso, et al. · Nature · 1,224
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The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes
2016 · Luis M Rodriguez-R, Konstantinos T Konstantinidis · 1,209
The genome of woodland strawberry (Fragaria vesca)
2010 · Vladimir Shulaev, Daniel J Sargent, et al. · Nature Genetics · 1,194
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Mapping and sequencing of structural variation from eight human genomes
2008 · Jeffrey M. Kidd, Gregory M. Cooper, et al. · Nature · 1,117
Ensembl 2023
2022 · Fergal J Martin, M Ridwan Amode, et al. · Nucleic Acids Research · 1,024
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Reference genome sequence of the model plant Setaria
2012 · Jeffrey L Bennetzen, Jeremy Schmutz, et al. · Nature Biotechnology · 921
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Genotyping‐by‐Sequencing for Plant Breeding and Genetics
2012 · Jesse A. Poland, Trevor W. Rife · The Plant Genome · 892
Marine DNA Viral Macro- and Microdiversity from Pole to Pole
2019 · Ann C. Gregory, Ahmed A. Zayed, et al. · Cell · 827
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Variation graph toolkit improves read mapping by representing genetic variation in the reference
2018 · Erik Garrison, Jouni Sirén, et al. · Nature Biotechnology · 815
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A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project
2024 · Alex D. Twyford, Jordan Beasley, et al. · Wellcome Open Research · 812
PICRUSt2: An improved and customizable approach for metagenome inference
2019 · Gavin M. Douglas, Vincent J. Maffei, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 811
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Whole-genome re-sequencing
2006 · David R Bentley · Current Opinion in Genetics & Development · 803
Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense
2018 · Maojun Wang, Lili Tu, et al. · Nature Genetics · 776
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Works count: 6,241
Citation count: 144,200
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