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Keyword

reference sequence database

Description: A reference sequence database is a curated collection of biological DNA or RNA sequences used to identify and classify sequences from samples.
OpenAlex ID: keywords/reference-sequence-database
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
2006 · K. D. Pruitt, T. Tatusova, et al. · Nucleic Acids Research · 4,482
The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data
2006 · J. R. Cole, B. Chai, et al. · Nucleic Acids Research · 1,167
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The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
2014 · Patrick J. Keeling, Fabien Burki, et al. · PLoS Biology · 1,040
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RESCRIPt: Reproducible sequence taxonomy reference database management
2021 · Michael S. Robeson, Devon R. O’Rourke, et al. · PLoS Computational Biology · 974
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Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain
2012 · Keith A. Jolley, Carly M. Bliss, et al. · Microbiology · 664
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
2011 · Jeffrey J Werner, Omry Koren, et al. · The ISME Journal · 607
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Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection
2017 · Robert Schlaberg, Charles Y. Chiu, et al. · Archives of Pathology & Laboratory Medicine · 549
wzi Gene Sequencing, a Rapid Method for Determination of Capsular Type for Klebsiella Strains
2013 · Sylvain Brisse, Virginie Passet, et al. · Journal of Clinical Microbiology · 342
Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants
2013 · Akifumi S. Tanabe, Hirokazu Toju · PLoS ONE · 300
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Origins and challenges of viral dark matter
2017 · Siddharth R. Krishnamurthy, David Wang · Virus Research · 257
Aspergillus, Penicillium and Talaromyces isolated from house dust samples collected around the world
2014 · C.M. Visagie, Y. Hirooka, et al. · Studies in Mycology · 257
Metabarcoding of marine zooplankton: prospects, progress and pitfalls
2016 · Ann Bucklin, Penelope K. Lindeque, et al. · Journal of Plankton Research · 242
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Why the COI barcode should be the community DNA metabarcode for the metazoa
2018 · Carmelo Andújar, Paula Arribas, et al. · Molecular Ecology · 237
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Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system
2016 · Patrick D Schloss, Matthew L Jenior, et al. · PeerJ · 226
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Methodology of fish eDNA and its applications in ecology and environment
2020 · Shuping Wang, Zhenguang Yan, et al. · The Science of The Total Environment · 224
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias
2018 · Søren M Karst, Morten S Dueholm, et al. · Nature Biotechnology · 221
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Phyto REF : a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy
2015 · Johan Decelle, Sarah Romac, et al. · Molecular Ecology Resources · 213
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Species-level classification of the vaginal microbiome
2012 · Jennifer M Fettweis, Myrna G Serrano, et al. · BMC Genomics · 186
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Over 2.5 million COI sequences in GenBank and growing
2018 · Teresita M. Porter, Mehrdad Hajibabaei · PLoS ONE · 170
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Automated high throughput animal CO1 metabarcode classification
2018 · Teresita M. Porter, Mehrdad Hajibabaei · Scientific Reports · 170
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DNA Surveillance: Web-Based Molecular Identification of Whales, Dolphins, and Porpoises
2003 · H. A. Ross · Journal of Heredity · 165
Cryptosporidiosis and Cryptosporidium species in animals and humans: A thirty colour rainbow?
2013 · Jan Šlapeta · International Journal for Parasitology · 161
Is metabarcoding suitable for estuarine plankton monitoring? A comparative study with microscopy
2016 · David Abad, Aitor Albaina, et al. · Marine Biology · 151
Molecular Identification of Commercialized Medicinal Plants in Southern Morocco
2012 · Anneleen Kool, Hugo J. de Boer, et al. · PLoS ONE · 151
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RESCRIPt: Reproducible sequence taxonomy reference database management for the masses
2020 · Michael S. Robeson, Devon R. O’Rourke, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 149
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Works count: 538
Citation count: 20,640
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