Keyword

RNA-seq

Description: RNA sequencing is a high-throughput molecular biology method for determining the sequences and abundance of RNA molecules in a sample.

Primary topic: Genomics and Phylogenetic Studies (21%)

Wikidata ID: wiki/Q68168612

OpenAlex ID: keywords/rna-seq

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

2014 · Michael I Love, Wolfgang Huber, et al. · Genome biology · 94,581

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limma powers differential expression analyses for RNA-sequencing and microarray studies

2015 · Matthew E. Ritchie, Belinda Phipson, et al. · Nucleic Acids Research · 40,200

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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

2013 · Yang Liao, Gordon K. Smyth, et al. · Bioinformatics · 27,062

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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

2011 · Bo Li, Colin N Dewey · BMC Bioinformatics · 22,107

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HTSeq—a Python framework to work with high-throughput sequencing data

2014 · Simon Anders, Paul Theodor Pyl, et al. · Bioinformatics · 21,377

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

2011 · Manfred G Grabherr, Brian J Haas, et al. · Nature Biotechnology · 21,058

Differential expression analysis for sequence count data

2010 · Simon Anders, Wolfgang Huber · Genome biology · 15,529

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StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

2015 · Mihaela Pertea, Geo M Pertea, et al. · Nature Biotechnology · 14,325

Mapping and quantifying mammalian transcriptomes by RNA-Seq

2008 · Ali Mortazavi, Brian A Williams, et al. · Nature Methods · 13,685

RNA-Seq: a revolutionary tool for transcriptomics

2008 · Zhong Wang, Mark Gerstein, et al. · Nature Reviews Genetics · 13,124

Salmon provides fast and bias-aware quantification of transcript expression

2017 · Rob Patro, Geet Duggal, et al. · Nature Methods · 12,617

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

2012 · Cole Trapnell, Adam Roberts, et al. · Nature Protocols · 12,116

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

2013 · Brian J Haas, Alexie Papanicolaou, et al. · Nature Protocols · 8,424

A scaling normalization method for differential expression analysis of RNA-seq data

2010 · Mark D Robinson, Alicia Oshlack · Genome biology · 7,825

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Gene ontology analysis for RNA-seq: accounting for selection bias

2010 · Matthew D Young, Matthew J Wakefield, et al. · Genome biology · 7,093

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Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

2016 · Mihaela Pertea, Daehwan Kim, et al. · Nature Protocols · 6,850

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

2015 · Nuala A. O'Leary, Mathew W. Wright, et al. · Nucleic Acids Research · 6,335

UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses

2017 · Darshan S. Chandrashekar, Bhuwan Bashel, et al. · Neoplasia · 6,073

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The National Center for Biotechnology Information

1990 · Dennis Benson, Mark Boguski, et al. · Genomics · 5,126

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

2009 · Likun Wang, Zhixing Feng, et al. · Bioinformatics · 4,545

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Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences

2015 · Charlotte Soneson, Michael I. Love, et al. · F1000Research · 3,910

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Profiling Tumor Infiltrating Immune Cells with CIBERSORT

2018 · Binbin Chen, Michael S. Khodadoust, et al. · Methods in molecular biology · 3,887

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

2013 · Linn Fagerberg, Björn M. Hallström, et al. · Molecular & Cellular Proteomics · 3,661

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RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

2008 · John C. Marioni, Christopher E. Mason, et al. · Genome Research · 2,766

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rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data

2014 · Shihao Shen, Juw Won Park, et al. · Proceedings of the National Academy of Sciences · 2,699

Works count: 20,480

Citation count: 625,400