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Keyword

sequence-based prediction

Description: Computational prediction using sequence information, including biological sequences and, in some design contexts, ordered structural representations.
OpenAlex ID: keywords/sequence-based-prediction
I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure
2005 · E. Capriotti, P. Fariselli, et al. · Nucleic Acids Research · 2,053
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
2005 · Z. Dosztanyi, V. Csizmok, et al. · Computer applications in the biosciences · 1,961
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Prediction of protein subcellular localization
2006 · Chin‐Sheng Yu, Yu‐Ching Chen, et al. · Proteins Structure Function and Bioinformatics · 1,796
Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins
2004 · Ana-Maria Fernandez-Escamilla, Frederic Rousseau, et al. · Nature Biotechnology · 1,660
Prediction of protein stability changes for single‐site mutations using support vector machines
2005 · Jianlin Cheng, Arlo Randall, et al. · Proteins Structure Function and Bioinformatics · 1,164
DeepLoc: prediction of protein subcellular localization using deep learning
2017 · José Juan Almagro Armenteros, Casper Kaae Sønderby, et al. · Bioinformatics · 1,143
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Protein interaction maps for complete genomes based on gene fusion events
1999 · Anton J. Enright, Ioannis Iliopoulos, et al. · Nature · 1,076
Predicting protein–protein interactions based only on sequences information
2007 · Juwen Shen, Jian Zhang, et al. · Proceedings of the National Academy of Sciences · 1,011
Predicting the Effects of Amino Acid Substitutions on Protein Function
2006 · Pauline C. Ng, Steven Henikoff · Annual Review of Genomics and Human Genetics · 978
DISOPRED3: precise disordered region predictions with annotated protein-binding activity
2014 · David T. Jones, Domenico Cozzetto · Bioinformatics · 878
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SNAP: predict effect of non-synonymous polymorphisms on function
2007 · Y. Bromberg, B. Rost · Nucleic Acids Research · 864
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Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences
2008 · Yanzhi Guo, Lezheng Yu, et al. · Nucleic Acids Research · 699
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SOLpro: accurate sequence-based prediction of protein solubility
2009 · Christophe N. Magnan, Arlo Randall, et al. · Bioinformatics · 689
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COMPARTMENTS: unification and visualization of protein subcellular localization evidence
2014 · J. X. Binder, S. Pletscher-Frankild, et al. · Database · 668
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Prediction of Protein Binding Regions in Disordered Proteins
2009 · Bálint Mészáros, István Simon, et al. · PLoS Computational Biology · 628
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ANCHOR: web server for predicting protein binding regions in disordered proteins
2009 · Zsuzsanna Dosztányi, Bálint Mészáros, et al. · Bioinformatics · 620
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NetSurfP‐2.0: Improved prediction of protein structural features by integrated deep learning
2019 · Michael Schantz Klausen, Martin Closter Jespersen, et al. · Proteins Structure Function and Bioinformatics · 574
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Predicting RNA-Protein Interactions Using Only Sequence Information
2011 · Usha K Muppirala, Vasant G Honavar, et al. · BMC Bioinformatics · 574
Exploiting heterogeneous sequence properties improves prediction of protein disorder
2005 · Zoran Obradovic, Kang Peng, et al. · Proteins Structure Function and Bioinformatics · 555
Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure
2009 · John A. Capra, Roman A. Laskowski, et al. · PLoS Computational Biology · 459
Sequence‐specific determination of protein and peptide concentrations by absorbance at 205 nm
2013 · Nicholas J. Anthis, G. Marius Clore · Protein Science · 450
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ACPred-FL: a sequence-based predictor using effective feature representation to improve the prediction of anti-cancer peptides
2018 · Leyi Wei, Chen Zhou, et al. · Bioinformatics · 439
Better prediction of protein cellular localization sites with the k nearest neighbors classifier.
1997 · P Horton, K Nakai · PubMed · 438
T-cell epitope vaccine design by immunoinformatics
2013 · Atanas Patronov, Irini Doytchinova · Open Biology · 426
iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition
2014 · Shou-Hui Guo, En-Ze Deng, et al. · Bioinformatics · 376
Works count: 2,306
Citation count: 79,330
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