T. Bryosalmonae Transcriptome Assembly Fasta Files
Year: 2020
Type: dataset
Abstract: This repository contains the intersect transcriptome of the myxozoan parasite Tetracapsuloides bryosalmonae isolated from two hosts; Bryozoan and Rainbow Trout. The transcriptome of T. brysosalmonae was assembled separately from each host, and then all transcripts present in both assemblies (as determined by reciprocal blast) were identified to form the "Intersect transcriptome". For more details on the materials and methods, please refer to the publication. For completeness, we have also included the transcriptome assemblies used at all stages of analysis as follows:invert_intersect.fa - final intersect transcriptome fish_derived_contigs.fa - assembly of all reads from Fish hostfish_filtered.fa - assembly of reads from Fish host after filtering with fish genomes.invert_all.fa - assembly of all reads from Bryozoan hostinvert_filtered.fa - assembly of reads from Bryozoan host after filtering with T. bryosalmonae draft genome
Source: Figshare
Authors: Faber, Marc, Shaw, Sophie, Yoon, Sohye, De Paiva Alves, Eduardo, Wang, Bei, Qi, Zhitao, Okamura, Beth, Hartikainnen, Hannah, Secombes, Christopher J., Holland, Jason W.
Language: English
Subfield: Parasitology
Field: Immunology and Microbiology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W4394348993