Work

Additional file 2 of The unresolved struggle of 16S rRNA amplicon sequencing: a benchmarking analysis of clustering and denoising methods

Year: 2025

Type: article

Abstract: Supplementary Material 2: fig. 2: rarefaction curves and alluvial plots for both single-end and paired-end data. Rarefaction curves were illustrated for representing sequencing depth for denoising tools against ASV-ref and clustering methods against OTU-ref for both single-end and paired-end conditions respectively. Alluvial plots were utilized for visualizing the bacterial content across denoising and clustering algorithms for paired-end method.

Source: Figshare

DOI: 10.6084/m9.figshare.29498855

Authors: Fares, Mohamed, Tharwat, Engy K., Cleenwerck, Ilse, Monsieurs, Pieter, Van Houdt, Rob, Vandamme, Peter, El-Hadidi, Mohamed, Mysara, Mohamed

Institutions: National Research Centre, Nile University, Ghent University, Instituut voor Tropische Geneeskunde, Belgian Nuclear Research Centre

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

OpenAlex ID: W7130735359

FWCI:

Cites:

Cited by:

Related to: 10