Work

Evaluating Protein Language Model Embeddings and Similarity Metrics for Alignment-Free Structural Similarity in the Twilight Zone

Year: 2026

Type: article

Abstract: Source code: https://www.biorxiv.org/content/10.64898/2026.07.31.742099v1

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.22016746

Authors: Danwada, Shivaram, Udomprasert, Priscilla, Raychawdhary, Nilanjana, Seals, Cheryl D, Wu, Lei, Bhattacharya, Sutanu

Institutions: Auburn University, Auburn University at Montgomery

Language: English

Topic: Protein Structure and Dynamics

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

Funder: National Science Foundation

Award: CAP: Developing a Machine Learning Lab for AI-Powered Training and Research

OpenAlex ID: W7203761932

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