Supplementary Material for Richards et al., 2026
Year: 2026
Type: supplementary-materials
Abstract: FileS1_SupplementalText_Figures_Tables.docx: a Word document containing additional details on methods, results and extended discussion of candidate genes found within the QTL regions identified in the main text.FileS2_Hybrid_Parent_Population_Phenotype_Data.xlxs: an Excel document with eye size, sleep, adipose tissue size, and total eaten measurements for the three mapping populations and parent populations. FileS3_LinkageMap_Markers.xlxs: an Excel document with the linkage maps generated from the three individual mapping populations, a consensus linkage map combining all three mapping populations and the 150 bp sequence surrounding each marker in the consensus linkage map.FileS4_WGS_wild_F0_sample_information.xlxs: an Excel document with the NCBI SRA accession numbers and general information for whole genome sequences of wild caught individuals from Rio Choy, Pachon cave, Tinaja cave and Molino cave populations as well as the F0 parents of the three mapping populations. FileS5_Hybrid_Genotypes.xlxs: an Excel file containing the QTL analysis genotypes of each hybrid at sites where the F0 parents were alternatively fixed for different genotypes. The hybrid genotypes are written as the F0 parent each allele was inherited from (M=Molino cave parent allele; T=Tinaja cave parent allele; P=Pachon cave parent allele, and S= Choy surface parent allele). File S6_Genes_in_QTL_Regions_NCBI_Gene_Names.xlxs: an Excel file with a list of all the annotated genes that fall within QTL regions. These tables also include a summary of the types of cave-relevant phenotypes these genes are annotated for in model organisms and whether a hard selective sweep has been detected for the gene in wild cave and surface populations. A table legend is included in the file to help navigate the different columns of this dataset. FileS7_gene_selection_information.xlxs: an Excel file with the presence or absence of selective sweep scans across 5-kb windows of the genome that overlap protein-coding gene regions.
Language: English
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W7203766745