Rapid intraspecies mitochondrial genome evolution revealed by deep population sampling of a major wheat pathogen Zymoseptoria tritici
Year: 2026
Type: dataset
Abstract: Mitochondrial genome annotations for the Zymoseptoria tritici (and related Zymoseptoria) isolate collection, split by sequencing technology. ## Illumina_mitos_annotations.zip Full MITOS (`runmitos.py`) output, one folder per Illumina-sequenced isolate (1,954 isolates). Each isolate folder contains: - `result.gff`, `result.bed` — annotated features (GFF3 / BED) - `result.fas`, `result.faa`, `result.seq` — nucleotide/protein sequences of annotated genes - `result.geneorder` — gene order summary - `result.mitos` / `ignored.mitos` — MITOS's internal annotation table (accepted / discarded hits) - `plots/` — per-feature secondary-structure plots (tRNAs etc., PDF/SVG/PS) - `blast/`, `mitfi-global/`, `stst.dat` — intermediate BLAST and covariance model (cmsearch/mitfi) search output used to build the annotation - `opt_log.txt` — MITOS run log ## PacBio_mfannot_annotations.zip Annotations for the 26 PacBio-assembled (reference-quality) isolates, produced with MFannot/mf2sqn (genetic code 4). One folder per isolate, `<isolate>/code_4/`, containing the complete MFannot/mf2sqn working folder: - `<isolate>.fasta` — input assembly - `<isolate>_code4.masterfile` — MFannot native annotation - `<isolate>_code4.masterfile.tbl` — NCBI 5-column feature table - `<isolate>_code4.masterfile.gbf` — GenBank flat file - `<isolate>_code4.masterfile.sqn` — ASN.1 Sequin submission file (submitter/citation affiliation: University of Neuchatel, Laboratory of Evolutionary Genetics) - `<isolate>_code4.masterfile.subInfo(.bak)` — mf2sqn submission metadata - `<isolate>_code4.mfannot.log`, `mf2sqn_pass1.log`, `mf2sqn_pass2.log` — run logs
Institution: University of Neuchâtel
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W7204446398