SPC-Clean: Sample data accompanying the manuscript "SPC-Clean: A napari Plugin for Reducing Speckle and Isolated Pixel Noise in Fluorescence Microscopy Images"
Year: 2026
Type: dataset
Abstract: ****************************************************************************************************************** Description ****************************************************************************************************************** Each ZIP file contains one image stack that we acquired for benchmarking the SPC-Clean algorithm. Image acquisition was performed on a Revvity OperaPhenix and TIF files were exported from Harmony v. 5.2. Each TIF is one z-plane of the image stack. The file name consists of regular expressions. "p" designates the z-plane. ****************************************************************************************************************** additional information ****************************************************************************************************************** For experimental procedures, acquisition settings and more details, please see: SPC-Clean: A napari Plugin for Reducing Speckle and Isolated Pixel Noise in Fluorescence Microscopy Images Pendar Alirezazadeh, Elena Marie Kirsch, Yuan Tian, Joerg Bewersdorf, Jens Rittscher, Philipp Mergenthaler Citation to follow. Preprint on BioRXiv, DOI: SPC-Clean is available on GitHub: https://github.com/MergenthalerLab/SPC-Clean If you find this code useful, please cite the paper. This work was supported by the Stiftung Charité to P.M. and J.R. [StC-VF-2024-59], the Berlin-Oxford Research Partnership through the Early Career Researchers program, and in part by the Einstein Foundation Berlin [EJF-2020-602, EVF-2021-619, EVF-2021-619-2, EVF-BUA-2022-694] to P.M., and the Volkswagen Stiftung [9A866] to P.M.. P.M. is Einstein Junior Fellow funded by the Einstein Foundation Berlin. ****************************************************************************************************************** Contact ****************************************************************************************************************** PD Dr. Philipp Mergenthaler Charité - Universitätsmedizin Berlin, Center for Stroke Research Berlin Charitéplatz 1, 10117 Berlin, Germany email: [email protected]
Language: English
Subfield: Computer Vision and Pattern Recognition
Field: Computer Science
Domain: Physical Sciences
Open Access status: green
OpenAlex ID: W7204605604