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Gennaro Gambardella

Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview
2021 · Shaked Slovin, Annamaria Carissimo, et al. · Methods in molecular biology · 268
A single-cell analysis of breast cancer cell lines to study tumour heterogeneity and drug response
2022 · G. Gambardella, G. Viscido, et al. · Nature Communications · 205
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Differential network analysis for the identification of condition-specific pathway activity and regulation
2013 · Gennaro Gambardella, Maria Nicoletta Moretti, et al. · Bioinformatics · 69
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GADD34 is a modulator of autophagy during starvation
2020 · Gennaro Gambardella, Leopoldo Staiano, et al. · Science Advances · 68
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Patients with genetically heterogeneous synchronous colorectal cancer carry rare damaging germline mutations in immune-related genes
2016 · Matteo Cereda, Gennaro Gambardella, et al. · Nature Communications · 59
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Fibroblast growth factor signalling controls nervous system patterning and pigment cell formation in Ciona intestinalis
2014 · Claudia Racioppi, Ashwani K. Kamal, et al. · Nature Communications · 56
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TRPV4 and purinergic receptor signalling pathways are separately linked in airway epithelia to CFTR and TMEM16A chloride channels
2019 · Michele Genovese, Anna Borrelli, et al. · The Journal of Physiology · 55
Predicting drug response from single-cell expression profiles of tumours
2023 · Simona Pellecchia, Gaetano Viscido, et al. · BMC Medicine · 45
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O-linked mucin-type glycosylation regulates the transcriptional programme downstream of EGFR
2020 · Virginia Tajadura-Ortega, Gennaro Gambardella, et al. · Glycobiology · 36
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Single-cell gene set enrichment analysis and transfer learning for functional annotation of scRNA-seq data
2023 · Melania Franchini, Simona Pellecchia, et al. · NAR Genomics and Bioinformatics · 35
The impact of microRNAs on transcriptional heterogeneity and gene co-expression across single embryonic stem cells
2017 · Gennaro Gambardella, Annamaria Carissimo, et al. · Nature Communications · 35
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Cancer of unknown primary stem-like cells model multi-organ metastasis and unveil liability to MEK inhibition
2021 · Federica Verginelli, Alberto Pisacane, et al. · Nature Communications · 30
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Reverse engineering a mouse embryonic stem cell-specific transcriptional network reveals a new modulator of neuronal differentiation
2012 · Rossella De Cegli, Simona Iacobacci, et al. · Nucleic Acids Research · 30
Single cell lineage tracing reveals clonal dynamics of anti-EGFR therapy resistance in triple negative breast cancer
2024 · Simona Pellecchia, Melania Franchini, et al. · Genome Medicine · 27
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A Tool for Visualization and Analysis of Single-Cell RNA-Seq Data Based on Text Mining
2019 · Gennaro Gambardella, Diego di Bernardo · Frontiers in Genetics · 17
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TFEBexplorer: An integrated tool to study genes regulated by the stress-responsive Transcription Factor EB
2022 · Rossella De Cegli, Diego Carrella, et al. · Autophagy Reports · 12
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Cancer of Unknown Primary (CUP): genetic evidence for a novel nosological entity? A case report
2020 · Silvia Benvenuti, Melissa Milan, et al. · EMBO Molecular Medicine · 10
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β-catenin perturbations control differentiation programs in mouse embryonic stem cells
2022 · Elisa Pedone, Mario Failli, et al. · iScience · 9
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Mutated axon guidance gene PLXNB2 sustains growth and invasiveness of stem cells isolated from cancers of unknown primary
2023 · Serena Brundu, Virginia Napolitano, et al. · EMBO Molecular Medicine · 8
MicroRNA 483‐3p overexpression unleashes invasive growth of metastatic colorectal cancer via NDRG1 downregulation and ensuing activation of the ERBB3 / AKT axis
2023 · Ermes Candiello, Gigliola Reato, et al. · Molecular Oncology · 7
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Joint processing of long- and short-read sequencing data with deep learning improves variant calling
2025 · Gennaro Gambardella · Cell Reports Methods · 6
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Computational Drug Repositioning and Elucidation of Mechanism of Action of Compounds against SARS-CoV-2
2020 · Napolitano, Francesco, Gambardella, Gennaro, et al. · arXiv (Cornell University) · 6
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MEGA-V: detection of variant gene sets in patient cohorts
2016 · Gennaro Gambardella, Matteo Cereda, et al. · Bioinformatics · 6
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A reverse-engineering approach to dissect post-translational modulators of transcription factor’s activity from transcriptional data
2015 · Gennaro Gambardella, Ivana Peluso, et al. · BMC Bioinformatics · 6
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Correction: Predicting drug response from single-cell expression profiles of tumours
2024 · Simona Pellecchia, Gaetano Viscido, et al. · BMC Medicine · 3
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Works count: 59
Citation count: 1,117
H-index: 15
I10-index: 17
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