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Hyunjin Shim

Influenza Virus Drug Resistance: A Time-Sampled Population Genetics Perspective
2014 · Matthieu Foll, Yu-Ping Poh, et al. · PLoS Genetics · 125
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On the importance of skewed offspring distributions and background selection in virus population genetics
2016 · K K Irwin, S Laurent, et al. · Heredity · 56
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Three Innovations of Next-Generation Antibiotics: Evolvability, Specificity, and Non-Immunogenicity
2023 · Hyunjin Shim · Antibiotics · 45
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Experimental adaptation of human echovirus 11 to ultraviolet radiation leads to resistance to disinfection and ribavirin
2017 · Anna Carratalà, Hyunjin Shim, et al. · Virus Evolution · 45
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An experimental evaluation of drug‐induced mutational meltdown as an antiviral treatment strategy
2016 · Claudia Bank, Nicholas Renzette, et al. · Evolution · 37
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Resistance of Echovirus 11 to ClO2 Is Associated with Enhanced Host Receptor Use, Altered Entry Routes, and High Fitness
2017 · Qingxia Zhong, Anna Carratalà, et al. · Environmental Science & Technology · 34
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Detecting and Quantifying Changing Selection Intensities from Time-Sampled Polymorphism Data
2016 · Hyunjin Shim, Stefan Laurent, et al. · G3 Genes Genomes Genetics · 22
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Rethinking Protein Drug Design with Highly Accurate Structure Prediction of Anti-CRISPR Proteins
2022 · Ho-min Park, Yunseol Park, et al. · Pharmaceuticals · 21
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Feature Learning of Virus Genome Evolution With the Nucleotide Skip-Gram Neural Network
2019 · Hyunjin Shim · Evolutionary Bioinformatics · 16
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In silico optimization of RNA–protein interactions for CRISPR-Cas13-based antimicrobials
2022 · Ho-min Park, Yunseol Park, et al. · Biology Direct · 14
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Diverse ATPase Proteins in Mobilomes Constitute a Large Potential Sink for Prokaryotic Host ATP
2021 · Hyunjin Shim, Haridha Shivram, et al. · Frontiers in Microbiology · 14
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Investigating the Genomic Background of CRISPR-Cas Genomes for CRISPR-Based Antimicrobials
2022 · Hyunjin Shim · Evolutionary Bioinformatics · 12
A pangenome analysis of ESKAPE bacteriophages: the underrepresentation may impact machine learning models
2024 · Jeesu Lee, Branden Hunter, et al. · Frontiers in Molecular Biosciences · 10
Sequencing, Fast and Slow: Profiling Microbiomes in Human Samples with Nanopore Sequencing
2023 · Yunseol Park, Jeesu Lee, et al. · Applied Biosciences · 8
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Futuristic Methods in Virus Genome Evolution Using the Third-Generation DNA Sequencing and Artificial Neural Networks
2019 · Hyunjin Shim · Springer eBooks · 7
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Self-assembling T7 phage syringes with modular genomes for targeted delivery of penicillin against β-lactam-resistant Escherichia coli
2025 · Hyunjin Shim · BMC Biotechnology · 6
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Potential antidiabetic activity and permeability assessment of the modified yeast-derived peptide, VLSTSFPPW (VW9)
2025 · Samira Alahyaribeik, Saeed Mirdamadi, et al. · Food Chemistry · 6
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CRISPR-Cas-Docker: web-based in silico docking and machine learning-based classification of crRNAs with Cas proteins
2023 · Ho-min Park, Jongbum Won, et al. · BMC Bioinformatics · 5
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Nanopore sequencing of protozoa: Decoding biological information on a string of biochemical molecules into human-readable signals
2025 · Branden Hunter, Timothy Cromwell, et al. · Computational and Structural Biotechnology Journal · 4
NAD: Noise-augmented direct sequencing of target nucleic acids by augmenting with noise and selective sampling
2025 · Hyunjin Shim · F1000Research · 2
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Targeting multidrug-resistant bacteria with genetic-information-free protein-only phages
2025 · Jeanette Batres, Branden Hunter, et al. · bioRxiv (Cold Spring Harbor Laboratory)
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Likelihood-free Inference of Population Genetic Parameters from Time-Sampled Genetic Data
2018 · Shim, Hyunjin · Infoscience (Ecole Polytechnique Fédérale de Lausanne)
The SIB Swiss Institute of bioinformatics' resources: Focus on curated databases
2016 · Lisandra Aguilar Bultet, José Aguilar-Rodríguez, et al. · Newcastle University ePrints (Newcastle Univesity)
Works count: 28
Citation count: 489
H-index: 12
I10-index: 13
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