AlexsLemonade/OpenScPCA-analysis: 2024-08-08
Year: 2024
Type: software
Abstract: The following includes the new modules developed by the Data Lab: infercnv-consensus-cell-type: a module for exploring different strategies to use consensus cell types as a normal reference when running InferCNV cell-type-neuroblastoma-04: a module for annotating the Neuroblastoma samples in SCPCP000004 cell-type-scimilarity: a module for annotating cells using SCimilarity The cell-type-consensus module was updated to now incorporate annotations from the cell-type-scimilarity module such that consensus cell types are now assigned if 2 out of 3 methods agree (SingleR, CellAssign, and SCimilarity). This release includes minor updates to the following modules: cell-type-wilms-06 cell-type-ETP-ALL-03 cell-type-nonETP-ALL-03 cell-type-ewings The following community-contributed analysis modules have been initiated and are in active development: cell-type-osteosarcoma-23
Authors: Stephanie J. Spielman, Ally Hawkins, Joshua Shapiro, Jaclyn Taroni, Maud Plaschka, Jen O'Malley, UTSouthwesternDSSR, Deepa Prasad, Jingxuan Chen, Danh Truong, Robert Jackson, Georgina Al-Badri, RS
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W6967843339